Browse Element(s) Details


OsAffx.3331.1.S1_at

Description tigr:9631.m02579
TID=OsAffx.3331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2625011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed
LOC_Os03g26210Os.9216.1.S1_at11/113+14978830..14980902Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220OsAffx.13048.1.S1_at9/113+14981280..14983325expressed protein
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26280OsAffx.13050.1.S1_at11/113+15008456..15009721expressed protein
LOC_Os03g26280OsAffx.7632.1.S1_at1/113+15008456..15009721expressed protein
LOC_Os03g26290NANA3+15013482..15017559retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3331.1.S1_at--930--911Chr03:14989982..14990006 (25 bp)
AGGCTCGGGCGCTGGTGTCGGTGAA
LOC_Os03g26250
OsAffx.3331.1.S1_at--709--2591Chr03:14990005..14990029 (25 bp)
AACGACGACATCGTGAGGCTCCGGG
LOC_Os03g26250
OsAffx.3331.1.S1_at--92--1871Chr03:14990006..14990030 (25 bp)
ACGACGACATCGTGAGGCTCCGGGA
LOC_Os03g26250
OsAffx.3331.1.S1_at--460--5791Chr03:14990008..14990032 (25 bp)
GACGACATCGTGAGGCTCCGGGACA
LOC_Os03g26250
OsAffx.3331.1.S1_at--840--1851Chr03:14990009..14990033 (25 bp)
ACGACATCGTGAGGCTCCGGGACAG
LOC_Os03g26250
OsAffx.3331.1.S1_at--1016--2091Chr03:14990012..14990036 (25 bp)
ACATCGTGAGGCTCCGGGACAGGCT
LOC_Os03g26250
OsAffx.3331.1.S1_at--393--9291Chr03:14990024..14990048 (25 bp)
TCCGGGACAGGCTGATGTGGCTGCA
LOC_Os03g26250
OsAffx.3331.1.S1_at--352--4071Chr03:14990145..14990169 (25 bp)
CGAGGACGCCCTCGATCATTTCTAT
LOC_Os03g26250
OsAffx.3331.1.S1_at--1020--951Chr03:14990147..14990171 (25 bp)
AGGACGCCCTCGATCATTTCTATCT
LOC_Os03g26250
OsAffx.3331.1.S1_at--134--8111Chr03:14990148..14990172 (25 bp)
GGACGCCCTCGATCATTTCTATCTC
LOC_Os03g26250
OsAffx.3331.1.S1_at--65--4291Chr03:14990154..14990178 (25 bp)
CCTCGATCATTTCTATCTCCGCGTC
LOC_Os03g26250
Target Sequence 
AGGCTCGGGCGCTGGTGTCGGTGAACGACGACATCGTGAGGCTCCGGGACAGGCTGATGTGGCTGCAGGCCTTCCTCCGG
GAGGCCGACGCCAAGCGACGCGCCGTCTCCGACGAGGTCAACAAGGTGTGGCTGCTGCAGACGCGCGACGCCGTCTTCGA
CGCCGAGGACGCCCTCGATCATTTCTATCTCCGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis