Browse Element(s) Details


OsAffx.3370.1.S1_at

Description tigr:9631.m02957
TID=OsAffx.3370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative inner mitochondrial membrane translocase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3023011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30200Os.7354.1.S1_at11/113+17191511..17196010Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g30210OsAffx.25377.3.S1_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.3.S1_x_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_s_at8/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_at3/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.3.S1_s_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_x_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.4.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.2.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30220OsAffx.25293.1.S1_at11/113+17203247..17204497Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30230OsAffx.3370.1.S1_at11/113+17208468..17209031Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30240OsAffx.25294.1.S1_at11/113+17213591..17214049hypothetical protein
LOC_Os03g30250Os.37902.1.S1_at11/113+17215334..17217366Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein
LOC_Os03g30270OsAffx.8319.1.S1_x_at2/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30270Os.12826.1.S1_at1/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30280OsAffx.13121.1.S1_at11/113+17233535..17234151hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3370.1.S1_at--854--5731Chr03:17208498..17208522 (25 bp)
GACTGTGTCTTGGACAACGCCGGCG
LOC_Os03g30230
OsAffx.3370.1.S1_at--872--8671Chr03:17208501..17208525 (25 bp)
TGTGTCTTGGACAACGCCGGCGCTG
LOC_Os03g30230
OsAffx.3370.1.S1_at--220--3891Chr03:17208699..17208723 (25 bp)
CTGTCGTCGGCGACCGACAGGCACG
LOC_Os03g30230
OsAffx.3370.1.S1_at--947--1571Chr03:17208844..17208868 (25 bp)
AGCTCATGATCAGGGATAGCGTGGA
LOC_Os03g30230
OsAffx.3370.1.S1_at--883--8511Chr03:17208865..17208889 (25 bp)
TGGAAGAGCACGACGATGACAAGCC
LOC_Os03g30230
OsAffx.3370.1.S1_at--901--8951Chr03:17208881..17208905 (25 bp)
TGACAAGCCCCGTAGAAACCAGCGG
LOC_Os03g30230
OsAffx.3370.1.S1_at--70--5551Chr03:17208895..17208919 (25 bp)
GAAACCAGCGGCCTTTGCCGGCGAA
LOC_Os03g30230
OsAffx.3370.1.S1_at--198--10272Chr08:14122731..14122751 (21 bp)
TTTGCCGGCGAAGACCAAGGAGGAT
NONE
OsAffx.3370.1.S1_at--388--6471Chr03:17208947..17208971 (25 bp)
GATAACGCCGGCGATTGACCATTTC
LOC_Os03g30230
OsAffx.3370.1.S1_at--985--6571Chr03:17208959..17208983 (25 bp)
GATTGACCATTTCCCGGTGCCTGAC
LOC_Os03g30230
OsAffx.3370.1.S1_at--295--10291Chr03:17208968..17208992 (25 bp)
TTTCCCGGTGCCTGACCCATTTATT
LOC_Os03g30230
Target Sequence 
GACTGTGTCTTGGACAACGCCGGCGCTGGCTTCGTGGGCGGCGCCGCCGCCGGCACGCTCGCCCACCTGTTCACGGGCCT
CCGCGACTTCCCCTGCGGCCGCCACCTCGCCGGCGCCGCCCAGGCCGTCCGCGACGGCGCCCCCTGCCTCGCCACCCGCT
GGGCCGCCCGCCTCGCCGTCTACAGCGCCGCCTGCCACGCCCTGTCGTCGGCGACCGACAGGCACGACGACCCGCTCGTC
TCCGTCGCCGCCGGCGCCGCCACGGGGGCCGTCGCCCGCTTGCGCCACGGCCCGCTCGCCGTGGGCCGCGCCGCGCTCGT
CGGCGCCGCCACGTTGGCCGCCGTGGAGCTCATGATCAGGGATAGCGTGGAAGAGCACGACGATGACAAGCCCCGTAGAA
ACCAGCGGCCTTTGCCGGCGAAGACCAAGGAGGATGACGTCATCCTGCGGATAACGCCGGCGATTGACCATTTCCCGGTG
CCTGACCCATTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis