Browse Element(s) Details


OsAffx.3554.1.S1_at

Description tigr:9631.m04732
TID=OsAffx.3554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g486269/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein
LOC_Os03g48642OsAffx.31174.5.S1_x_at6/113+27679746..27681044hypothetical protein
LOC_Os03g48642OsAffx.31174.4.S1_x_at4/113+27679746..27681044hypothetical protein
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3554.1.S1_at--894--9291NONE
TCCCCGTGGCTGAGTGCCAAACTGC
NONE
OsAffx.3554.1.S1_at--379--4171NONE
CCCGTGGCTGAGTGCCAAACTGCCA
NONE
OsAffx.3554.1.S1_at--772--2551Chr03:27673881..27673905 (25 bp)
AACTGCCAACGGGATATCAATGCAC
LOC_Os03g48626
OsAffx.3554.1.S1_at--700--4391Chr03:27673877..27673901 (25 bp)
GCCAACGGGATATCAATGCACAAGT
LOC_Os03g48626
OsAffx.3554.1.S1_at--292--3991Chr03:27673872..27673896 (25 bp)
CGGGATATCAATGCACAAGTGTGAC
LOC_Os03g48626
OsAffx.3554.1.S1_at--93--2231Chr03:27673858..27673882 (25 bp)
ACAAGTGTGACAATATGGCTTCTCA
LOC_Os03g48626
OsAffx.3554.1.S1_at--333--7471Chr03:27673854..27673878 (25 bp)
GTGTGACAATATGGCTTCTCAGTAT
LOC_Os03g48626
OsAffx.3554.1.S1_at--74--5611Chr03:27673850..27673874 (25 bp)
GACAATATGGCTTCTCAGTATTTTG
LOC_Os03g48626
OsAffx.3554.1.S1_at--1014--851Chr03:27673844..27673868 (25 bp)
ATGGCTTCTCAGTATTTTGTTTGCT
LOC_Os03g48626
OsAffx.3554.1.S1_at--293--4911Chr03:27673841..27673865 (25 bp)
GCTTCTCAGTATTTTGTTTGCTGTA
LOC_Os03g48626
OsAffx.3554.1.S1_at--320--3751Chr03:27673837..27673861 (25 bp)
CTCAGTATTTTGTTTGCTGTAGATG
LOC_Os03g48626
Target Sequence 
TCCCCGTGGCTGAGTGCCAAACTGCCAACGGGATATCAATGCACAAGTGTGACAATATGGCTTCTCAGTATTTTGTTTGC
TGTAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis