Browse Element(s) Details


OsAffx.3620.1.S1_at

Description tigr:9631.m05462
TID=OsAffx.3620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5594011/11hypothetical protein
LOC_Os11g293001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55880NANA3+31763214..31763636hypothetical protein
LOC_Os03g55890OsAffx.3617.1.S1_at11/113+31764449..31768626ternary complex factor MIP1, putative, expressed
LOC_Os03g55920OsAffx.13499.1.S1_at11/113+31779680..31783343hypothetical protein
LOC_Os03g55930Os.4177.1.S1_at10/113+31784349..3178617930S ribosomal protein S9, chloroplast precursor, putative, expressed
LOC_Os03g55940OsAffx.3620.1.S1_at11/113+31788253..31788867hypothetical protein
LOC_Os03g55950Os.15251.1.S1_at9/113+31792873..31796791f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os03g55960Os.9049.1.S1_at10/113+31797473..31798395EF hand family protein, expressed
LOC_Os03g55970Os.17075.1.S1_at11/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_x_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.57396.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3620.1.S1_at--1122--5311Chr03:31788283..31788307 (25 bp)
GAAGGGAGATACACGACCTCCACAC
LOC_Os03g55940
OsAffx.3620.1.S1_at--280--691Chr03:31788361..31788385 (25 bp)
ATGACGATGGCCGGGATGCCGAACC
LOC_Os03g55940
OsAffx.3620.1.S1_at--4--1731Chr03:31788395..31788419 (25 bp)
ACCAGCGTGCCAATGTCGATGGCCG
LOC_Os03g55940
OsAffx.3620.1.S1_at--623--4392Chr03:31788403..31788427 (25 bp)
GCCAATGTCGATGGCCGGGATGCTC
LOC_Os03g55940
OsAffx.3620.1.S1_at--1065--1991Chr03:31788461..31788485 (25 bp)
ACTCGGCGGTGCTTGTAGACGAAGC
LOC_Os03g55940
OsAffx.3620.1.S1_at--1095--4972Chr03:31788505..31788529 (25 bp)
GCATCCTCGAGGTCGGGCGGGTGGA
LOC_Os03g55940
OsAffx.3620.1.S1_at--874--311Chr03:31788553..31788577 (25 bp)
ATACGGCACCACAAAGGCGGAGGCA
LOC_Os03g55940
OsAffx.3620.1.S1_at--757--8011Chr03:31788605..31788629 (25 bp)
GGAGGCTTGCGCTCCAGCTCGCTAG
LOC_Os03g55940
OsAffx.3620.1.S1_at--411--10711Chr03:31788611..31788635 (25 bp)
TTGCGCTCCAGCTCGCTAGCAGCTG
LOC_Os03g55940
OsAffx.3620.1.S1_at--686--1512Chr03:31788689..31788713 (25 bp)
AGCAGCTGCTGTTGCCTCTCCATCG
LOC_Os03g55940
OsAffx.3620.1.S1_at--650--4912Chr12:7768869..7768889 (21 bp)
GCTTCGAAATCCTAGCCGCCATCGT
NONE
Target Sequence 
GAAGGGAGATACACGACCTCCACACCGCCGACGACGACGCCCTGTCCGCCGACGAAGAAGCTGACGATGGTGACGGCCAT
GACGATGGCCGGGATGCCGAACCCCCACCCCCACCAGCGTGCCAATGTCGATGGCCGGGATGCTCGACGAGGCGGAGGCG
AGGTCGTCGAGGTGGAGGACTCGGCGGTGCTTGTAGACGAAGCGGCGGCGGCGGCGGCGGCGGCATCCTCGAGGTCGGGC
GGGTGGAGGCTGCCCCTGCCCGCCACCGCCATACGGCACCACAAAGGCGGAGGCAAGGTCGCCGAGGTGGCCTCGTGGCA
GCGGAGGCTTGCGCTCCAGCTCGCTAGCAGCTGCTGCCGCCTCTCCACAGCGTCCCTCTCCGCCTCCTTCGCCGGCAAGG
CTCGCCAGCAGCTGCTGTTGCCTCTCCATCGCATCCCCCTTCGCCTCCGTCACTGGCGAGGCCATGGGGCTACCCCTTCA
CTTCCGTCGCCGGCGAGGCCATGGGGCCGCTTCGAAATCCTAGCCGCCATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis