Browse Element(s) Details


OsAffx.3671.1.S1_at

Description tigr:9631.m06146
TID=OsAffx.3671.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6223011/11zinc finger protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3671.1.S1_at--655--4611Chr03:35190854..35190878 (25 bp)
GCGAGGAGGCGCTTCTACTCCTGCC
LOC_Os03g62230
OsAffx.3671.1.S1_at--434--1071Chr03:35190902..35190926 (25 bp)
AGGGAGCACAAGAGCTTCCAGCCGC
LOC_Os03g62230
OsAffx.3671.1.S1_at--574--9691Chr03:35190927..35190951 (25 bp)
TCAAGACGCCCACCTGCGTCAAGAA
LOC_Os03g62230
OsAffx.3671.1.S1_at--972--8351Chr03:35190960..35190984 (25 bp)
GGCGGAGCCACTGCGACAAGAGCTT
LOC_Os03g62230
OsAffx.3671.1.S1_at--215--4531Chr03:35190990..35191014 (25 bp)
GCCGCCGCTGCAACGTCAAGAGGTT
LOC_Os03g62230
OsAffx.3671.1.S1_at--676--2571Chr03:35191001..35191025 (25 bp)
AACGTCAAGAGGTTCTCCGTCGTCG
LOC_Os03g62230
OsAffx.3671.1.S1_at--239--1391Chr03:35191223..35191247 (25 bp)
AGAACGGTGGACACGAACCGCTTCT
LOC_Os03g62230
OsAffx.3671.1.S1_at--981--2611Chr03:35191238..35191262 (25 bp)
AACCGCTTCTTCTCCGATGGATTGA
LOC_Os03g62230
OsAffx.3671.1.S1_at--337--6591Chr03:35191257..35191281 (25 bp)
GATTGATGATCAAAGGCAGCATGGA
LOC_Os03g62230
OsAffx.3671.1.S1_at--612--691Chr03:35191284..35191308 (25 bp)
ATGAGCGAGGAAGCCTCTCGCCGAT
LOC_Os03g62230
OsAffx.3671.1.S1_at--626--7551Chr03:35191310..35191334 (25 bp)
GGGCTCGATTACTGTGAATTCGATG
LOC_Os03g62230
Target Sequence 
GCGAGGAGGCGCTTCTACTCCTGCCCGTACGTGGGGTGCAAGAGGAACAGGGAGCACAAGAGCTTCCAGCCGCTCAAGAC
GCCCACCTGCGTCAAGAACCATTACCGGCGGAGCCACTGCGACAAGAGCTTCACCTGCCGCCGCTGCAACGTCAAGAGGT
TCTCCGTCGTCGCCGACCTCCGCACCCACGAGAAGCACTGCGGCCGCGACCGCTGGGTCTGCTCCTGCGGCACCTCCTTC
TCCCGCAAGGACAAGCTCTTCGCCCACGTCGCCATCTTCGACGGCCACTCGCCGGCGCTGCCGCCCGAGGACTACGACGA
CGACGCCGCCTCCGGTCAGCTGCCGCACGCCGCCGGCGAGGCAGTGGGCAGAACGGTGGACACGAACCGCTTCTTCTCCG
ATGGATTGATGATCAAAGGCAGCATGGAGGATGAGCGAGGAAGCCTCTCGCCGATGGGGCTCGATTACTGTGAATTCGAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis