Browse Element(s) Details


OsAffx.3696.1.S1_s_at

Description tigr:9632.m00072
TID=OsAffx.3696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AC025417 T12C24.9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0167411/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01630NANA4+416053..419343retrotransposon protein, putative, unclassified
LOC_Os04g01640NANA4+423796..424539hypothetical protein
LOC_Os04g01650Os.54604.1.S1_at9/114+433847..435380D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein
LOC_Os04g01660Os.53039.1.S1_at11/114+436550..437648D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3696.1.S1_s_at--789--4031Chr04:446898..446922 (25 bp)
CGTTCGGCTGCGTGATCGCCTACAA
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--36--9151Chr04:446906..446930 (25 bp)
TGCGTGATCGCCTACAACTCGAGGT
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--1126--7391Chr04:446909..446933 (25 bp)
GTGATCGCCTACAACTCGAGGTCAC
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--695--9851Chr04:446918..446942 (25 bp)
TACAACTCGAGGTCACCGAAGGCGT
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--530--3251Chr04:446920..446944 (25 bp)
CAACTCGAGGTCACCGAAGGCGTCG
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--989--4471Chr04:446947..446971 (25 bp)
GCCGTACAAGTTTTACCCCAGCGTG
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--865--7031Chr04:446950..446974 (25 bp)
GTACAAGTTTTACCCCAGCGTGCGG
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--422--1211Chr04:446955..446979 (25 bp)
AGTTTTACCCCAGCGTGCGGGAGCT
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--5--4091Chr04:447121..447145 (25 bp)
CGAGCTGGTGAGGTGCCTGCGGGAA
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--81--7431Chr04:447173..447197 (25 bp)
GTGTACGAGAACGAGCCGGAGGTGC
LOC_Os04g01674
OsAffx.3696.1.S1_s_at--239--9131Chr04:447228..447252 (25 bp)
TGCTGTCGGACCACCGCGCGGTGAT
LOC_Os04g01674
Target Sequence 
CGTTCGGCTGCGTGATCGCCTACAACTCGAGGTCACCGAAGGCGTCGGCGCCGTACAAGTTTTACCCCAGCGTGCGGGAG
CTCGCCGCGGAGAGCGACGTGCTGGTGCTGAGCTGCGCGCTGACGGAGGAGACGCGGCGCATGGTGGGCCGGGAGGTGAT
GGAGGCGCTGGGGAAGGGCGGCGTGCTGGTGAACGTGGGGCGCGGCGGGCTGGTGGACGAGGCCGAGCTGGTGAGGTGCC
TGCGGGAAGGGGTGCTCGGCGGCGCCGGGCTGGACGTGTACGAGAACGAGCCGGAGGTGCCGCCGGAGCTGTGGGGGATG
GACAACGTCGTGCTGTCGGACCACCGCGCGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3696.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis