Browse Element(s) Details


OsAffx.3750.1.S1_at

Description tigr:9632.m00777
TID=OsAffx.3750.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0860011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08560OsAffx.25929.1.S1_at11/114+4631708..4637648Protein phosphatase 2C containing protein, expressed
LOC_Os04g08570OsAffx.3749.1.S1_s_at11/114+4638807..4639709hypothetical protein
LOC_Os04g08580NANA4+4651776..4655328retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08590OsAffx.25930.1.S1_at11/114+4659208..4659456hypothetical protein
LOC_Os04g08600OsAffx.3750.1.S1_at11/114+4661723..4665812Zinc finger, C2H2 type family protein
LOC_Os04g08610OsAffx.1353.1.S1_x_at1/114+4668544..4669146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08620OsAffx.28036.1.S1_at10/114+4670111..4670910hypothetical protein
LOC_Os04g08620Os.49232.1.S1_x_at1/114+4670111..4670910hypothetical protein
LOC_Os04g08630Os.57189.1.S1_at5/114+4675897..4676206hypothetical protein
LOC_Os04g08640OsAffx.25931.1.S1_at11/114+4678620..4679150embryogenesis transmembrane protein, putative, expressed
LOC_Os04g08650OsAffx.25932.1.S1_at10/114+4682693..4683713hypothetical protein
LOC_Os04g08660OsAffx.25933.1.S1_at11/114+4689304..4689744hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3750.1.S1_at--621--4251Chr04:4662294..4662318 (25 bp)
CCGTGAGCACTGTTCTTGAGTTGCT
LOC_Os04g08600
OsAffx.3750.1.S1_at--919--6051Chr04:4662277..4662301 (25 bp)
GAGTTGCTTATATATGGCCTTCTAG
LOC_Os04g08600
OsAffx.3750.1.S1_at--668--231Chr04:4662268..4662292 (25 bp)
ATATATGGCCTTCTAGCTCAGCTCA
LOC_Os04g08600
OsAffx.3750.1.S1_at--540--10571Chr04:4662258..4662282 (25 bp)
TTCTAGCTCAGCTCAGTGTCAAGCT
LOC_Os04g08600
OsAffx.3750.1.S1_at--1085--1571Chr04:4662249..4662273 (25 bp)
AGCTCAGTGTCAAGCTAGCTCTACA
LOC_Os04g08600
OsAffx.3750.1.S1_at--404--7092Chr07:11222443..11222647 (25 bp)
GTCAAGCTAGCTCTACACATTGTAC
NONE
OsAffx.3750.1.S1_at--829--9851Chr04:4662219..4662243 (25 bp)
TACAACCACACTACAAATCGATCAG
LOC_Os04g08600
OsAffx.3750.1.S1_at--1029--831Chr04:4662125..4662149 (25 bp)
ATGGAGCTGCAGCTTCGGCTTCTCA
LOC_Os04g08600
OsAffx.3750.1.S1_at--324--9411Chr04:4662058..4662082 (25 bp)
TCGTCGTACACCTGCGGCTACTGCA
LOC_Os04g08600
OsAffx.3750.1.S1_at--381--1331Chr04:4661976..4662000 (25 bp)
AGAGGGCCAGGCTCAGGCAATTCCC
LOC_Os04g08600
OsAffx.3750.1.S1_at--538--511Chr04:4661833..4661857 (25 bp)
ATCGTCTACAGCTTCTTCTCCACGG
LOC_Os04g08600
Target Sequence 
CCGTGAGCACTGTTCTTGAGTTGCTTATATATGGCCTTCTAGCTCAGCTCAGTGTCAAGCTAGCTCTACACATTGTACAA
CCACACTACAAATCGATCAGTAAATCAATGGAGAGCAGGAGCGCGAGAGAGCATGGCCATGGCCACCTTCATCAGCAGCA
TCAGCGGCCATGGAGCTGCAGCTTCGGCTTCTCATGGCCGCCGCTGCAGAGGTCGCCGCCGCCGTCGTCGTCGTCGTCGT
CGTACACCTGCGGCTACTGCAGGAGGGAGTTCAGGTCGGCGCAGGCGCTGGGAGGCCACATGAACGTGCACAGGAGGGAG
AGGGCCAGGCTCAGGCAATTCCCCAACCCTAGACCTCATCCCCTTCCCAACCTCAACCTCTCGCCGCCGCCGCCACCGCC
GCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGTGCTACTGCCCCGGCGATCGTCCGGCCATCGTCTACAGCTTCTTCT
CCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis