Browse Element(s) Details


OsAffx.3780.1.S1_at

Description tigr:9632.m01179
TID=OsAffx.3780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1304011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12980Os.14583.1.S1_at11/114+7143586..7146224Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12990OsAffx.26011.1.S1_at11/114+7146697..7148291F-box domain containing protein
LOC_Os04g13000OsAffx.7046.1.S1_at7/114+7150545..7154748retrotransposon protein, putative, LINE subclass
LOC_Os04g13010OsAffx.26012.1.S1_at11/114+7157534..7158379F-box domain containing protein
LOC_Os04g13020NANA4+7160118..7163087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13030Os.10703.2.S1_x_at1/114+7163405..7169503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13040OsAffx.3780.1.S1_at11/114+7170107..7171009F-box domain containing protein
LOC_Os04g13050OsAffx.26013.1.S1_at11/114+7174762..7180150hypothetical protein
LOC_Os04g13050Os.37083.1.S1_at1/114+7174762..7180150hypothetical protein
LOC_Os04g13060OsAffx.26014.1.S1_at11/114+7186357..7187052hypothetical protein
LOC_Os04g13070NANA4+7188918..7189205hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.5782.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_x_at1/114+7193739..7198139hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3780.1.S1_at--59--9891Chr04:7170425..7170449 (25 bp)
TACATACGCGCATGGAAGGGCTCTC
LOC_Os04g13040
OsAffx.3780.1.S1_at--45--491Chr04:7170553..7170577 (25 bp)
ATCTGTGTCTACTTCCCGACTAAAA
LOC_Os04g13040
OsAffx.3780.1.S1_at--826--2431Chr04:7170575..7170599 (25 bp)
AAAAGATTGCATCTCTCTGGCCTAG
LOC_Os04g13040
OsAffx.3780.1.S1_at--923--4431Chr04:7170594..7170618 (25 bp)
GCCTAGTTTTGGACGGTTGCTTCGA
LOC_Os04g13040
OsAffx.3780.1.S1_at--398--6391Chr04:7170691..7170715 (25 bp)
GATCGAATCTGCCACGCTGAAGAGT
LOC_Os04g13040
OsAffx.3780.1.S1_at--458--9191Chr04:7170740..7170764 (25 bp)
TGCCTCCTGGAGTGTACTACATTGG
LOC_Os04g13040
OsAffx.3780.1.S1_at--50--3671Chr04:7170821..7170845 (25 bp)
CTTAGAGTACGCTTGGTCGATCCAA
LOC_Os04g13040
OsAffx.3780.1.S1_at--999--1531Chr04:7170862..7170886 (25 bp)
AGCATCGATCCGTGAGAAGTCCTAC
LOC_Os04g13040
OsAffx.3780.1.S1_at--90--5331Chr04:7170877..7170901 (25 bp)
GAAGTCCTACGAGCCGATTAACTTT
LOC_Os04g13040
OsAffx.3780.1.S1_at--548--2591Chr04:7170905..7170929 (25 bp)
AACGATCTATGCTTGTCACTTGGTG
LOC_Os04g13040
OsAffx.3780.1.S1_at--983--2251Chr04:7170946..7170970 (25 bp)
AAATCTCAAGTTATCGTGGTCTCGA
LOC_Os04g13040
Target Sequence 
TACATACGCGCATGGAAGGGCTCTCGGCTGATCGAGTGTTGCATCCTCGGCGGATTCCGGCACCGACCCGCCGCCGCCGA
GATCGCCGTCGGCGTCGGCGTGCCGTTGTTCAGGCTGCCCTGGCTACCATCTGTGTCTACTTCCCGACTAAAAAGATTGC
ATCTCTCTGGCCTAGTTTTGGACGGTTGCTTCGATGAGTGCATCTGTTCATCCTGCCCAATCTTGGAAGCCATGGAGCTC
AAATCTTGCTCATGCGAATTCAACAAGATCGAATCTGCCACGCTGAAGAGTTTGGCCATCCATGGATGCAGAAGTTGCCT
CCTGGAGTGTACTACATTGGCTATCAAGACGCCAAGGCTCACCTCCCTTCTCCTGAGAATTACAGTTTATTATGAACTTA
GAGTACGCTTGGTCGATCCAATGGATTCCTTGATCGAAGCATCGATCCGTGAGAAGTCCTACGAGCCGATTAACTTTGAC
AACGATCTATGCTTGTCACTTGGTGCCCTAGCCAGCGTCAGAAATCTCAAGTTATCGTGGTCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis