Browse Element(s) Details


OsAffx.3963.1.S1_at

Description tigr:9632.m02944
TID=OsAffx.3963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g310209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30990Os.35344.18.S1_x_at10/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990Os.35344.3.S1_x_at9/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990OsAffx.22940.5.S1_x_at3/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein
LOC_Os04g31070Os.2674.1.S1_at11/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31070Os.57486.1.S1_x_at9/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3963.1.S1_at--534--4251Chr04:18352529..18352553 (25 bp)
CCGTGAGTCAGACCATGAGTTTGTT
LOC_Os04g31020
OsAffx.3963.1.S1_at--358--5851Chr04:18352539..18352563 (25 bp)
GACCATGAGTTTGTTGTCACAATCA
LOC_Os04g31020
OsAffx.3963.1.S1_at--1056--6631Chr04:18352551..18352575 (25 bp)
GTTGTCACAATCAACATCTTCCTAG
LOC_Os04g31020
OsAffx.3963.1.S1_at--1045--4731NONE
GCTGATCACTGGAGGCTATATAGTT
NONE
OsAffx.3963.1.S1_at--583--6752Chr04:18353499..18353523 (25 bp)
GTTAATTATTACTTGCTACTCCCTC
LOC_Os04g31020
OsAffx.3963.1.S1_at--634--3751Chr04:18353922..18354407 (25 bp)
CTCAGCCATGGCAATTACAGGTATT
LOC_Os04g31020
OsAffx.3963.1.S1_at--1141--8431Chr04:18354456..18354565 (25 bp)
GGCCAATAAAACCAGAGTTTCTCTT
LOC_Os04g31020
OsAffx.3963.1.S1_at--1126--3671Chr04:18354563..18354587 (25 bp)
CTTTCTGCTGTTATCAGCGGTGCGT
LOC_Os04g31020
OsAffx.3963.1.S1_at--907--1291Chr04:18355186..18355253 (25 bp)
AGATGACTGCTCAAGATTCCGCATT
LOC_Os04g31020
OsAffx.3963.1.S1_at--135--5731Chr04:18355190..18355257 (25 bp)
GACTGCTCAAGATTCCGCATTGGGT
LOC_Os04g31020
OsAffx.3963.1.S1_at--597--2151NONE
ACACCGTGAGATTCAGAAGGTCAAA
NONE
Target Sequence 
CCGTGAGTCAGACCATGAGTTTGTTGTCACAATCAACATCTTCCTAGCGTTGGGGCTGATCACTGGAGGCTATATAGTTA
ATTATTACTTGCTACTCCCTCCATTCCATAATATAAGATTAATGAAGATATCAGTTGCAGAGAGGGCTATTGTGGTTCCT
CAGCCATGGCAATTACAGGTATTTCTTGTCATGGTTTTTGTGAAGAAAAAAAATCTTTTGACAAGTATGCAGGCCAATAA
AACCAGAGTTTCTCTTTCTGCTGTTATCAGCGGTGCGTGGCACATGACATATTTATGGCAACTTAACATCGATGCTGCGC
CTTTGCAGATGATGATGGAGAAGGAGCTGATGAGTGAAATCAAGGTCATGGATATGGTATGGAACTGCAAGTTTTTTGGA
ACACCGTTGTTGTTCATGGACATAATGGTCATAGATGACTGCTCAAGATTCCGCATTGGGTGCTTGCCAGGGAATTTGAT
TTTGACATGCTTTTCTCAAGGTGCATTTGTTGATCCAAGGAAACACCGTGAGATTCAGAAGGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis