Browse Element(s) Details


OsAffx.4145.2.S1_x_at

Description tigr:9632.m04949
TID=OsAffx.4145.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5126011/11hypothetical protein
LOC_Os04g512903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51220NANA4+30130348..30131283retrotransposon protein, putative, unclassified
LOC_Os04g51230NANA4+30131899..30138054retrotransposon protein, putative, unclassified
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4145.2.S1_x_at--166--372Chr04:30154629..30154653 (25 bp)
ATCACCGCCCGTCGCCGTGGAAGGT
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--1104--8931Chr04:30154729..30154753 (25 bp)
TGACGTCCACGGCAACGGACATCAC
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--1121--2752Chr04:30164003..30164027 (25 bp)
AAGACCAGGAGCGTGCCGGCAGATC
LOC_Os04g51290
OsAffx.4145.2.S1_x_at--676--8251Chr04:30154875..30154899 (25 bp)
GGCACGCGCTGTTACACATGTGGAA
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--885--2111Chr04:30154890..30154914 (25 bp)
ACATGTGGAACAAACGGCGGGCGAT
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--875--6211Chr04:30154912..30154936 (25 bp)
GATGGCGAAGCAACGTGGCGGCGTC
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--603--9432Chr04:30164184..30164208 (25 bp)
TCGGGCGCGCGCTGTTCCAAATGTG
LOC_Os04g51290
OsAffx.4145.2.S1_x_at--805--891Chr04:30155003..30155027 (25 bp)
AGGCGCGCGCTTTTCCAAATGTGGG
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--277--10651Chr04:30155015..30155039 (25 bp)
TTCCAAATGTGGGTCCAACGGCGGG
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--377--2391Chr04:30155102..30155126 (25 bp)
AAACGGCGGGCTACCGCAAGCGCTG
LOC_Os04g51260
OsAffx.4145.2.S1_x_at--688--4371Chr04:30155157..30155181 (25 bp)
CCAAGAAGTTGCACTGGTGGCAGCG
LOC_Os04g51260
Target Sequence 
ATCACCGCCCGTCGCCGTGGAAGGTTCTCGGCGGTGTCCTCCACCGCACGACACGCCGTGGGGAGAAGAACAACGAGGGG
GCGCCCCCGCTGTTCAGCCGTGACGTCCACGGCAACGGACATCACCGCCCGTCGCCGTGGAAGGCTCTCGGCGGTGTCCT
CCATCGTGCGACACGCCGTGGGGAGAAGAAGACCAGGAGCGTGCCGGCAGATCATCGTGGCGGCGTCGGCGGCGGCGGTG
GCGTCGGGCACGCGCTGTTACACATGTGGAACAAACGGCGGGCGATGGCGAAGCAACGTGGCGGCGTCGGGCGCGCGCTG
TTCCAAATGTGGGGCAAGCGGCGGGCGGCGGCGAAGCAGCGTGGCGGCGGCGTCAGGCGCGCGCTTTTCCAAATGTGGGT
CCAACGGCGGGCGACGACGGCGAAGCGGCGTGGTGGCGGCGGCGTCGCGCACGCGCTGTTCCACATGTGGGGGAAACGGC
GGGCTACCGCAAGCGCTGGGATGTGCGGTACGGGAAGCCGGTGGAAGGCCAAGAAGTTGCACTGGTGGCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4145.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis