Browse Element(s) Details


OsAffx.4155.1.S1_at

Description tigr:9632.m05079
TID=OsAffx.4155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5242011/11hypothetical protein
LOC_Os07g133601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed
LOC_Os04g52390Os.53340.1.S1_at11/114+30909247..30914331Potassium transporter 11, putative, expressed
LOC_Os04g52400Os.4851.1.S1_at11/114+30920159..30922461oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g52410Os.57418.1.S1_at11/114+30924033..30925135MADS-box protein ZMM17, putative, expressed
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4155.1.S1_at--401--4251Chr04:30934470..30934494 (25 bp)
CCGTGCGTTACGGTTGGTATGACAA
LOC_Os04g52420
OsAffx.4155.1.S1_at--556--172Chr12:14551764..14551877 (25 bp)
ATTTATGGTGTAGCAATTGCACGGC
NONE
OsAffx.4155.1.S1_at--419--9471Chr04:30935099..30935120 (22 bp)
TCTGGGCGGTGATCTGGCGAGGCGA
LOC_Os04g52420
OsAffx.4155.1.S1_at--941--6052Chr04:30935119..30935143 (25 bp)
GAGTTCGGCGGCTCGATGCGTCGAG
LOC_Os04g52420
OsAffx.4155.1.S1_at--834--3071Chr04:30935235..30935259 (25 bp)
AATCAGTGGGTGACGCGGAGCGCGT
LOC_Os04g52420
OsAffx.4155.1.S1_at--340--3192Chr07:7665316..7665340 (25 bp)
CAATGCCGGGCAGATGTGGAACGCC
LOC_Os07g13360
OsAffx.4155.1.S1_at--461--8491Chr04:30935406..30935430 (25 bp)
TGGAACGCCGCCTGGAATGACGATG
LOC_Os04g52420
OsAffx.4155.1.S1_at--176--3011Chr04:30935421..30935445 (25 bp)
AATGACGATGCAGTCGCGAGCGCAC
LOC_Os04g52420
OsAffx.4155.1.S1_at--532--7172Chr04:30935455..30935479 (25 bp)
GTCGGCGAGCTAGCTTGTTCGCGCA
LOC_Os04g52420
OsAffx.4155.1.S1_at--927--5911Chr04:30935461..30935485 (25 bp)
GAGCTAGCTTGTTCGCGCAGGATCG
LOC_Os04g52420
OsAffx.4155.1.S1_at--218--10791Chr04:30935469..30935493 (25 bp)
TTGTTCGCGCAGGATCGGCGGCCAC
LOC_Os04g52420
Target Sequence 
CCGTGCGTTACGGTTGGTATGACAACATTTATGGTGTAGCAATTGCACGGCGTTCTGGACTTGTTCTGGGCGGTGATCTG
GCGAGGCGAGTTCGGCGGCTCGATGCGTCGAGGGCGTCGCCCGGTCCCGGGAGGGGCGGCACCCAGTCGCGGGTGGGGCG
GCGCCGACGAGGGCGTTGGAGGAGGTCGGCGAGCGAGTGGGTGAATCAGTGGGTGACGCGGAGCGCGTCGCGGAGGACGG
AGTCGAAGACGCCGACGGAGAGCATGGCGCCGAGGGCGTCGTCGCCGCCGGCCCCGGGGGGAGGCGCCAGGGCGCGGTTG
AGCCTCGAGGGCCGCCGTGAGCGCGCCCTTGCCGCCGCCAATGCCGGGCAGATGTGGAACGCCGCCTGGAATGACGATGC
AGTCGCGAGCGCACCTGAGCGCGGTCGGCGAGCTAGCTTGTTCGCGCAGGATCGGCGGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis