Browse Element(s) Details


OsAffx.4159.1.S1_x_at

Description tigr:9632.m05111
TID=OsAffx.4159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucose 4-epimerase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5273011/11UDP-glucose 4-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52700OsAffx.14381.1.S1_x_at11/114+31160287..31161664expressed protein
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0019567biological_processarabinose biosynthesis
GO:0005794cellular_componentGolgi apparatus
GO:0003824molecular_functioncatalytic activity
GO:0050373molecular_functionUDP-arabinose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4159.1.S1_x_at--1120--1911Chr04:31187058..31187082 (25 bp)
ACGGATTTCTGGTGCTTGCTTTGAT
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--1101--7611Chr04:31187201..31187225 (25 bp)
GGGAACTGATTACCCTACAGCTGAT
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--538--1931Chr04:31187256..31187280 (25 bp)
ACGGATCTCGTTGATGCTCATGTGA
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--999--4811Chr04:31187283..31187307 (25 bp)
GCTCTTGATAAAGCTCAGCCTGGCA
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--240--2131Chr04:31187488..31187512 (25 bp)
ACAGGAGCTAGCATCAAGGTTTCAT
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--767--9731Chr04:31187501..31187525 (25 bp)
TCAAGGTTTCATTCCTTACCCGGAG
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--499--9931Chr04:31187517..31187541 (25 bp)
TACCCGGAGACCAGGAGACTATGCT
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--476--7371Chr04:31187552..31187576 (25 bp)
GTGACCCATCCAAAATCCATGACGA
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--783--1951Chr04:31187582..31187606 (25 bp)
ACTGGACAGCCCGTTACATTGATCT
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--163--6771Chr04:31187594..31187618 (25 bp)
GTTACATTGATCTTCGCGAAAGCCT
LOC_Os04g52730
OsAffx.4159.1.S1_x_at--1062--4591Chr04:31187609..31187633 (25 bp)
GCGAAAGCCTTTCAACTGCATGGAA
LOC_Os04g52730
Target Sequence 
ACGGATTTCTGGTGCTTGCTTTGATGCAGCACTGGGAATCATTCCAGGTTTGAAGGTTCGGGGAACTGATTACCCTACAG
CTGATGGAACTTGCATAAGGGACTATATTGATGTCACGGATCTCGTTGATGCTCATGTGAAAGCTCTTGATAAAGCTCAG
CCTGGCAAAGTTGGAATCTACAATGTTGGCACAGGACATGGTAGATCAGTGAAGGAGTTTGTAGAAGCATGTAAGAGCGC
AACAGGAGCTAGCATCAAGGTTTCATTCCTTACCCGGAGACCAGGAGACTATGCTGAAGTTTACAGTGACCCATCCAAAA
TCCATGACGAGCTGAACTGGACAGCCCGTTACATTGATCTTCGCGAAAGCCTTTCAACTGCATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4159.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis