Browse Element(s) Details


OsAffx.4177.1.S1_at

Description tigr:9632.m05342
TID=OsAffx.4177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5495011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54910NANA4+32447360..32447797hypothetical protein
LOC_Os04g54920OsAffx.26607.3.S1_at10/114+32448815..32449959hypothetical protein
LOC_Os04g54920Os.36476.1.S1_at1/114+32448815..32449959hypothetical protein
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54940Os.17881.1.S1_at10/114+32465478..32468508microtubule-associated EB1 family protein, putative, expressed
LOC_Os04g54950OsAffx.4177.1.S1_at11/114+32468995..32469968hypothetical protein
LOC_Os04g54960OsAffx.14421.1.S1_at10/114+32470977..32473449hypothetical protein
LOC_Os04g54970OsAffx.4217.1.S1_at11/114+32477543..32478846hypothetical protein
LOC_Os04g54980OsAffx.14422.1.S1_at10/114+32479642..32481779hypothetical protein
LOC_Os04g54990OsAffx.26609.1.S1_at11/114+32482457..32483307hypothetical protein
LOC_Os04g55000OsAffx.4178.1.S1_at11/114+32484196..32484834cullin, putative
LOC_Os04g55009NANA4+32488693..32489123NA
LOC_Os04g55020OsAffx.22848.4.S1_at2/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.3.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.4.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4177.1.S1_at--313--5351Chr04:32469616..32469640 (25 bp)
GAAGACGATGTCTCGGCACTCCCGG
LOC_Os04g54950
OsAffx.4177.1.S1_at--885--9311Chr04:32469481..32469505 (25 bp)
TCCCTCTTGGGCTGGATTCTCAAAT
LOC_Os04g54950
OsAffx.4177.1.S1_at--83--1291Chr04:32469434..32469458 (25 bp)
AGATCCTAGTTTACTCTCAAGCTTA
LOC_Os04g54950
OsAffx.4177.1.S1_at--602--10411Chr04:32469412..32469436 (25 bp)
TTATTGGTTCTTCTGATCGGTGGTT
LOC_Os04g54950
OsAffx.4177.1.S1_at--740--10811Chr04:32469389..32469413 (25 bp)
TTGGCAGACTGCTTACTTCAAGGAA
LOC_Os04g54950
OsAffx.4177.1.S1_at--965--6451Chr04:32469350..32469374 (25 bp)
GATCAAGGGATCCATGCGCATTCCT
LOC_Os04g54950
OsAffx.4177.1.S1_at--374--10151Chr04:32469320..32469344 (25 bp)
TATCCTCACCATTTTCACGTTCTGT
LOC_Os04g54950
OsAffx.4177.1.S1_at--510--9471Chr04:32469300..32469324 (25 bp)
TCTGTGCGGCTGTAGCAACATTGCT
LOC_Os04g54950
OsAffx.4177.1.S1_at--939--3551Chr04:32469239..32469263 (25 bp)
CATCATCTCGCATCTCATCAAGAAA
LOC_Os04g54950
OsAffx.4177.1.S1_at--344--5971Chr04:32469211..32469235 (25 bp)
GAGAAGCTTCTAGAGTCCCATGATG
LOC_Os04g54950
OsAffx.4177.1.S1_at--526--5791Chr04:32469182..32469206 (25 bp)
GACGCAATCTGAGAAGCTTCCGGAG
LOC_Os04g54950
Target Sequence 
GAAGACGATGTCTCGGCACTCCCGGAGATCGACGGCGCCGCCTCCGCGCTTCCCTGCACCGCCTCCACTGCCAGTCCTCG
TAGCTGCGTCCCCGGCTTCCCCAACACCCAGAGCGCCTTCCCCAACACCCGGCTCTCCCTCTTGGGCTGGATTCTCAAAT
TAGTCCAGGAGAGATTCTCAGGAGATCCTAGTTTACTCTCAAGCTTATTGGTTCTTCTGATCGGTGGTTGGCAGACTGCT
TACTTCAAGGAAGCTGTAGAAAGGAGGATCAAGGGATCCATGCGCATTCCTCCCTGTATCCTCACCATTTTCACGTTCTG
TGCGGCTGTAGCAACATTGCTGTACAAAGCGGTCAAAGCTAGCGAAGAGTTAGATGGCATCATCTCGCATCTCATCAAGA
AATTCGAGAAGCTTCTAGAGTCCCATGATGTGAAGACGCAATCTGAGAAGCTTCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis