Browse Element(s) Details


OsAffx.4243.1.S1_at

Description tigr:9633.m00309
TID=OsAffx.4243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0384011/11Glycosyl hydrolase family 9 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03790OsAffx.26720.1.S1_at11/115+1660031..1660321hypothetical protein
LOC_Os05g03800OsAffx.14528.1.S1_x_at11/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.1.S1_at10/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.2.S1_x_at6/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_x_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800Os.5212.1.S1_at1/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03810NANA5+1673273..1675282trehalose-phosphatase family protein
LOC_Os05g03820Os.12568.2.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_x_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_x_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830Os.23217.1.S1_s_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03840OsAffx.4243.1.S1_at11/115+1685199..1687100Glycosyl hydrolase family 9 protein
LOC_Os05g03850NANA5+1694722..1694979retrotransposon protein, putative, unclassified
LOC_Os05g03860Os.3373.1.S1_at11/115+1695736..1697113bZIP transcription factor family protein, expressed
LOC_Os05g03870Os.54175.1.S1_at11/115+1698490..1699237expressed protein
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4243.1.S1_at--561--5371Chr05:1685754..1685778 (25 bp)
GAAGACAAACCTGGAGCAGTTCATC
LOC_Os05g03840
OsAffx.4243.1.S1_at--130--9131Chr05:1685659..1685683 (25 bp)
TGCTGTGGTGGGACTCATGGAACAA
LOC_Os05g03840
OsAffx.4243.1.S1_at--789--631Chr05:1685633..1685657 (25 bp)
ATGCAGTACGTGACCCTGGCGTCCC
LOC_Os05g03840
OsAffx.4243.1.S1_at--230--4791Chr05:1685479..1685503 (25 bp)
GCTCGAACCCCGAGACGATGAGCTA
LOC_Os05g03840
OsAffx.4243.1.S1_at--557--7211Chr05:1685394..1685418 (25 bp)
GTCGATCAAGTCCAGCCCGGCGAAG
LOC_Os05g03840
OsAffx.4243.1.S1_at--47--5151Chr05:1685362..1685386 (25 bp)
GCAAGGGTGGGTTCGACTACCTCAA
LOC_Os05g03840
OsAffx.4243.1.S1_at--901--2871Chr05:1685336..1685360 (25 bp)
AAGGGCTCACCGGATCCCAATGTGA
LOC_Os05g03840
OsAffx.4243.1.S1_at--719--531Chr05:1685323..1685347 (25 bp)
ATCCCAATGTGATCGCCGGCGCCAT
LOC_Os05g03840
OsAffx.4243.1.S1_at--1064--3951Chr05:1685287..1685311 (25 bp)
CGGATGCCGATGACCGGTACGACGA
LOC_Os05g03840
OsAffx.4243.1.S1_at--176--7831Chr05:1685272..1685296 (25 bp)
GGTACGACGATTCCCGGCAGAATTT
LOC_Os05g03840
OsAffx.4243.1.S1_at--203--6551Chr05:1685264..1685288 (25 bp)
GATTCCCGGCAGAATTTCCGGCAGG
LOC_Os05g03840
Target Sequence 
GAAGACAAACCTGGAGCAGTTCATCTGCAACCTCGTGCAGCACTCCGGCGGCAATGGCGGCGGCGGCGGGGGAGCCAGGC
TCAGCCCCGGCGGCATGCTGTGGTGGGACTCATGGAACAACATGCAGTACGTGACCCTGGCGTCCCTCGTACTCGCCGTG
CACGCCGACCACCTGACGGCGGCGAGGTCGGCCTCCCTCCAGTGCGGCGGTGGCGCCTCGCGGTCGCCAGCGCAGCTCAC
CGCGTTCGTGCGGTCGCAGGTGGACTACATCCTCGGCTCGAACCCCGAGACGATGAGCTACATGGTCGGGTACGGCAGCA
GGTACCCGGCGGAGGTGCACCACCGGGCGGCGTCGTTGCCGTCGATCAAGTCCAGCCCGGCGAAGGTCACCTGCAAGGGT
GGGTTCGACTACCTCAACAAGGGCTCACCGGATCCCAATGTGATCGCCGGCGCCATCGTCGGAGGGCCGGATGCCGATGA
CCGGTACGACGATTCCCGGCAGAATTTCCGGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis