Browse Element(s) Details


OsAffx.4322.1.S1_x_at

Description tigr:9633.m01159
TID=OsAffx.4322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1343011/11hypothetical protein
LOC_Os05g503002/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein
LOC_Os05g13400NANA5+7421842..7423178hypothetical protein
LOC_Os05g13410NANA5+7423842..7425258hypothetical protein
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13480OsAffx.4324.1.S1_at11/115+7455783..7456355hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4322.1.S1_x_at--776--8252Chr05:28747705..28747729 (25 bp)
GGCAGCCTGGAGAATCTCATCCTGA
LOC_Os05g50300
OsAffx.4322.1.S1_x_at--376--9831Chr05:7430785..7430809 (25 bp)
TAAACAAGCCGATTTACAAGTCGTG
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--244--2231Chr05:7430800..7430824 (25 bp)
ACAAGTCGTGCGTCGACGAGTTCAT
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--55--4271Chr05:7430845..7430869 (25 bp)
CCGGCGAGCCGGTGTAAGACAACGT
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--370--1352Chr05:7430876..7430900 (25 bp)
AGAGATCGGGTGTCCTCGCCGAGCA
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--1066--4071Chr05:7430895..7430919 (25 bp)
CGAGCAACGCATCCGGGTACCTCGG
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--910--8411Chr05:7430918..7430942 (25 bp)
GGCCACCCGTTGACGAGCCATGAGG
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--973--8931Chr05:7430928..7430952 (25 bp)
TGACGAGCCATGAGGTGTTCTGCGC
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--235--2891Chr05:7430966..7430990 (25 bp)
AAGGACGTCGGCTCGTCGTGCTACG
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--152--1531Chr05:7431025..7431049 (25 bp)
AGCAGAGCGGTATCTCTACGTCATC
LOC_Os05g13430
OsAffx.4322.1.S1_x_at--954--4151Chr05:7431250..7431274 (25 bp)
CGCCGGCTGGCTTGCCAAAACAGAA
LOC_Os05g13430
Target Sequence 
GGCAGCCTGGAGAATCTCATCCTGATAAACAAGCCGATTTACAAGTCGTGCGTCGACGAGTTCATCACCATGGTGGACGA
GGAGACCGGCGAGCCGGTGTAAGACAACGTGGAGGGAGAGATCGGGTGTCCTCGCCGAGCAACGCATCCGGGTACCTCGG
CCACCCGTTGACGAGCCATGAGGTGTTCTGCGCGAGGCTGCCGGGGAAGGACGTCGGCTCGTCGTGCTACGTGTGCGCGG
GTGACCGTGGCGTGGTGGTCAGGGGAGCAGAGCGGTATCTCTACGTCATCGGCCGGAGCGCCGACGTCCTCGCGCTCGAC
GTCGACGGCGACCAGCCTGTGCGCGCGCGCCTCCGCCTCCCCGCCCAACACCACGCAGCCCCGTCGACACCATTAACGAC
CGCCCGCCGCCCTCACCATCTCCTGTGTCACAGCCGCTGCCGCCACCTCCTCCTCCTCTCCCGCCTCACCCCAGTGGTCT
CTGCCCCAGCCGCCGGCTGGCTTGCCAAAACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4322.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis