Browse Element(s) Details


OsAffx.4526.1.S1_at

Description tigr:9633.m03289
TID=OsAffx.4526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable beta-galactosidase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3536011/11Glycosyl hydrolases family 35 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os05g35340OsAffx.27176.1.S1_s_at11/115+20895356..20896726expressed protein
LOC_Os05g35340Os.7559.1.S1_at11/115+20895356..20896726expressed protein
LOC_Os05g35350OsAffx.4525.1.S1_at11/115+20902626..20903091hypothetical protein
LOC_Os05g35360OsAffx.4526.1.S1_at11/115+20906344..20915118Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g35370OsAffx.14973.1.S1_at10/115+20915376..20918109hypothetical protein
LOC_Os05g35380NANA5+20923504..20926508universal stress protein family protein, expressed
LOC_Os05g35390OsAffx.22848.4.S1_at2/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.4.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.3.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4526.1.S1_at--1134--10771Chr05:20907384..20907408 (25 bp)
TTGATATATCATCCGCTTACTTGGT
LOC_Os05g35360
OsAffx.4526.1.S1_at--619--6871Chr05:20907285..20907385 (25 bp)
GTATAAGACAACCTTTTCCACACCA
LOC_Os05g35360
OsAffx.4526.1.S1_at--102--7371Chr05:20907245..20907269 (25 bp)
GTGACACTAAACCTTACTAGCATGG
LOC_Os05g35360
OsAffx.4526.1.S1_at--981--471Chr05:20907188..20907212 (25 bp)
ATCGGACGGTATTGGGTCTCCTTCA
LOC_Os05g35360
OsAffx.4526.1.S1_at--852--9491Chr05:20907172..20907196 (25 bp)
TCTCCTTCAAGGCTCCAAGTGGGCA
LOC_Os05g35360
OsAffx.4526.1.S1_at--333--8651Chr05:20907157..20907177 (21 bp)
TGGGCAGCCCTCTCAATCACTATAT
LOC_Os05g35360
OsAffx.4526.1.S1_at--711--2031Chr05:20907045..20907066 (22 bp)
ACTATATCACATACCACGAGGCTTC
LOC_Os05g35360
OsAffx.4526.1.S1_at--539--4051Chr05:20907029..20907053 (25 bp)
CGAGGCTTCCTGACACCTAAAGACA
LOC_Os05g35360
OsAffx.4526.1.S1_at--816--9831Chr05:20907012..20907036 (25 bp)
TAAAGACAATCTCCTCGTCCTTGTT
LOC_Os05g35360
OsAffx.4526.1.S1_at--823--2291Chr05:20906983..20907007 (25 bp)
AAATGGGAGGCGACCCGCTACAGAT
LOC_Os05g35360
OsAffx.4526.1.S1_at--1086--5791Chr05:20906972..20906996 (25 bp)
GACCCGCTACAGATTACCGTGAATA
LOC_Os05g35360
Target Sequence 
TTGATATATCATCCGCTTACTTGGTATAAGACAACCTTTTCCACACCACCGGGCAATGATGCAGTGACACTAAACCTTAC
TAGCATGGGAAAGGGCGAAGTATGGGTCAATGGAGAGAGCATCGGACGGTATTGGGTCTCCTTCAAGGCTCCAAGTGGGC
AGCCCTCTCAATCACTATATCACATACCACGAGGCTTCCTGACACCTAAAGACAATCTCCTCGTCCTTGTTGAGGAAATG
GGAGGCGACCCGCTACAGATTACCGTGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis