Browse Element(s) Details


OsAffx.4571.1.S1_at

Description tigr:9633.m03744
TID=OsAffx.4571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4014011/11retrotransposon protein, putative, unclassified
LOC_Os04g208906/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40080OsAffx.4567.1.S1_at11/115+23467405..23468510WRKY DNA binding domain containing protein
LOC_Os05g40090OsAffx.24046.2.S1_x_at11/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.7.S1_x_at4/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.3.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.5.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40100OsAffx.10222.1.S1_x_at2/115+23473740..23475130hypothetical protein
LOC_Os05g40100OsAffx.727.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.10263.1.S1_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.51841.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40110OsAffx.23890.2.S1_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.2.S1_x_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.4.S1_x_at1/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40120NANA5+23487966..23488975hypothetical protein
LOC_Os05g40130OsAffx.4570.1.S1_at11/115+23489476..23490046hypothetical protein
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4571.1.S1_at--831--2931Chr05:23492587..23492611 (25 bp)
AAGGCCAAAGATGCTGGACACTTGC
LOC_Os05g40140
OsAffx.4571.1.S1_at--616--8131Chr05:23492602..23492626 (25 bp)
GGACACTTGCTAGGGCTGGTACCAC
LOC_Os05g40140
OsAffx.4571.1.S1_at--319--1112Chr05:23492631..23492655 (25 bp)
AGTCCCTGGAGGATTAACACACCTA
LOC_Os05g40140
OsAffx.4571.1.S1_at--806--10132Chr05:23492659..23492683 (25 bp)
TATGCAGATGACACGATCCTTTTCA
LOC_Os05g40140
OsAffx.4571.1.S1_at--357--4032Chr05:23492672..23492696 (25 bp)
CGATCCTTTTCATGACAAACTCGGA
LOC_Os05g40140
OsAffx.4571.1.S1_at--226--52Chr05:23492704..23492728 (25 bp)
ATTGTCACAGTGAAGTTCCTACTTT
LOC_Os05g40140
OsAffx.4571.1.S1_at--799--7612Chr05:23493139..23493163 (25 bp)
GGGAAGCCTTATGCAGACCCAAGGA
LOC_Os05g40140
OsAffx.4571.1.S1_at--38--5391Chr05:23493204..23493228 (25 bp)
GAAGCACTCCTCTGCGAATGGATTT
LOC_Os05g40140
OsAffx.4571.1.S1_at--328--1151Chr05:23493252..23493276 (25 bp)
AGTCCCTGCTGCAATCTTTTGAGGA
LOC_Os05g40140
OsAffx.4571.1.S1_at--651--1072Chr05:23493292..23493316 (25 bp)
AGGGAGGTGGCTTCTTTCAATCTTC
LOC_Os05g40140
OsAffx.4571.1.S1_at--564--7991Chr05:23493367..23493391 (25 bp)
GGATGAAACTGGGTAGTGCCTACAA
LOC_Os05g40140
Target Sequence 
AAGGCCAAAGATGCTGGACACTTGCTAGGGCTGGTACCACATCTAGTCCCTGGAGGATTAACACACCTACAATATGCAGA
TGACACGATCCTTTTCATGACAAACTCGGAGGAAAACATTGTCACAGTGAAGTTCCTACTTTATTGTTATGAAGCTATGT
CAGAAGGGAAGAAGAAATATCACTTGATCAAATGGGAAGCCTTATGCAGACCCAAGGAGGATGGGGGGCTGGGCTTCATC
AACACTAAGATTATGAATGAAGCACTCCTCTGCGAATGGATTTATAAGTTGGAATCTGGGAACAATAGTCCCTGCTGCAA
TCTTTTGAGGAAGAAATATTTAGGTCAGGGAGGTGGCTTCTTTCAATCTTCTCCCGAAGGGGGTTCACAGTTCTGGAAAA
GTTTACATGAGGTTAAGAATTGGATGAAACTGGGTAGTGCCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis