Browse Element(s) Details


OsAffx.4587.1.S1_at

Description tigr:9633.m03874
TID=OsAffx.4587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4136011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41320NANA5+24125452..24125910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.1.S1_x_at11/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.3.S1_x_at5/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.2.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.5.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41340Os.25048.1.S1_at1/115+24137443..24138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41350NANA5+24140664..24142825retrotransposon, putative, centromere-specific
LOC_Os05g41360OsAffx.4587.1.S1_at11/115+24143999..24145518expressed protein
LOC_Os05g41370Os.7632.1.S1_at11/115+24147487..24151578Protein kinase domain containing protein, expressed
LOC_Os05g41380OsAffx.27274.1.S1_at8/115+24153958..24154514expressed protein
LOC_Os05g41390Os.24881.1.A1_at7/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41390OsAffx.27284.1.S1_s_at3/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41400OsAffx.4588.1.S1_at11/115+24160946..24162463Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4587.1.S1_at--1128--4551Chr05:24145232..24145256 (25 bp)
GCGCTTATGGAGTTGTAGCCACGAT
LOC_Os05g41360
OsAffx.4587.1.S1_at--227--4371Chr05:24145214..24145238 (25 bp)
CCACGATTGCGTTGGCTGGATTGGC
LOC_Os05g41360
OsAffx.4587.1.S1_at--214--8431Chr05:24145192..24145216 (25 bp)
GGCCACAATCCTGTATTTCAACGAG
LOC_Os05g41360
OsAffx.4587.1.S1_at--577--9671Chr05:24144723..24144747 (25 bp)
TCAAGGAACCTTACCCTTACCTGAG
LOC_Os05g41360
OsAffx.4587.1.S1_at--1149--9631Chr05:24144650..24144674 (25 bp)
TCAGTGGGCTAGTTATCTCGATCAT
LOC_Os05g41360
OsAffx.4587.1.S1_at--1120--5291Chr05:24144480..24144504 (25 bp)
GAAGGAGCACAACCGTTCGTACAGC
LOC_Os05g41360
OsAffx.4587.1.S1_at--927--2931Chr05:24144443..24144467 (25 bp)
AAGGCTCGCTGCTATGAAATATTCA
LOC_Os05g41360
OsAffx.4587.1.S1_at--842--2951Chr05:24144382..24144406 (25 bp)
TAAGACCAATGGATGTCCCTTTCGC
LOC_Os05g41360
OsAffx.4587.1.S1_at--466--4531Chr05:24144359..24144383 (25 bp)
GCCCCTAACGGATTCGCAGACTGGA
LOC_Os05g41360
OsAffx.4587.1.S1_at--135--7351Chr05:24144324..24144348 (25 bp)
GTGCAATAGTCTGTATTCCCATCCT
LOC_Os05g41360
OsAffx.4587.1.S1_at--695--91Chr05:24144310..24144334 (25 bp)
ATTCCCATCCTGGTAGCTTTGACTG
LOC_Os05g41360
Target Sequence 
GCGCTTATGGAGTTGTAGCCACGATTGCGTTGGCTGGATTGGCCACAATCCTGTATTTCAACGAGAGCACAGACAAGTCA
GGAGAGGATGTATGTGACAGGGGGGCTGTCAAGGAACCTTACCCTTACCTGAGTAAGGAAGCAGCCATCAAGGCAGGGTT
TGTGGACAAAGATGGCACAGTTCAGTGGGCTAGTTATCTCGATCATGAAGCATCTGCTAAGGAGGTGAGTGACTGGGAAG
AAGCTGTGAAGCAGCAGGATGTGAAGGTCGATGAGGCAACCATGAAGGCCAGGTTTCAGGACTGGATGAAGGAGCACAAC
CGTTCGTACAGCACCGAGGAGGAGAAGGCTCGCTGCTATGAAATATTCAAGGAGACCGCGATAAGGGCAGACAAGGCTAA
TGCGGTAAGACCAATGGATGTCCCTTTCGCCCCTAACGGATTCGCAGACTGGACTGATGAAGAGTGCAATAGTCTGTATT
CCCATCCTGGTAGCTTTGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis