Browse Element(s) Details


OsAffx.4601.1.S1_x_at

Description tigr:9633.m03999
TID=OsAffx.4601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g430609/11KOW motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43020OsAffx.21897.5.S1_x_at4/115+24898712..24901653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43030Os.54570.1.S1_at11/115+24903821..24906332expressed protein
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006333biological_processchromatin assembly or disassembly
GO:0006350biological_processtranscription
GO:0006352biological_processtranscription initiation
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4601.1.S1_x_at--12--7651Chr05:24930860..24930884 (25 bp)
GGGAGCGCCAAAACCTTCTGGTGGA
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--198--9271Chr05:24930929..24930953 (25 bp)
TCCTGCTGACAGCATGACTGGTGGT
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--1122--6151Chr05:24930990..24931014 (25 bp)
GAGGATACCTGGAATTCGTCTGGAG
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--1044--2211Chr05:24931017..24931041 (25 bp)
ACAAGGGATTCAGGTACGACCCCAG
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--780--6991Chr05:24931030..24931054 (25 bp)
GTACGACCCCAGGAAAATCTTCTTG
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--547--1411Chr05:24931116..24931140 (25 bp)
AGACAAGTCGGTGGAGGCAGCTCCT
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--848--5491Chr05:24931163..24931187 (25 bp)
GAACAGCAGCAAGTGCGAGGGCACC
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--534--8551Chr05:24931621..24931645 (25 bp)
TGGATGCGCCTCTGGGCATAATGAT
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--10--6331Chr05:24931643..24931667 (25 bp)
GATGAAGCTCTCAAACACCGTTTCT
LOC_Os05g43060
OsAffx.4601.1.S1_x_at--740--10311Chr05:24931663..24931687 (25 bp)
TTTCTCCATGGTTGCGTGCGCTTCA
NONE
OsAffx.4601.1.S1_x_at--765--4651Chr05:24931676..24931700 (25 bp)
GCGTGCGCTTCACAAGGGTTATGTA
NONE
Target Sequence 
GGGAGCGCCAAAACCTTCTGGTGGAGATGACCAGGCAGGAAAAAACAATGGAAACAATCCGTGGGGTGCTCCTGCTGACA
GCATGACTGGTGGTGGATCCGGTGGAGGAGGGTCTTGGAAAAATAAGACTGAGGATACCTGGAATTCGTCTGGAGGAACA
AGGGATTCAGGTACGACCCCAGGAAAATCTTCTTGGGGTGGATCAGAAGATGGCCAAAAGAAAGAAGGATCATGGGGGAA
AAGCGAGGGGAGCGGGAGACAAGTCGGTGGAGGCAGCTCCTGGGACAAGCCGGATGGAGGATGGAACAGCAGCAAGTGCG
AGGGCACCCAAGGAGGTGGCGGCGGTAGCTCCTGGGACAAGGCGGATGGCGGGAACAGTAACAAGGGCACCCAAGGAGGT
GGTGGCGGCAGCTCCTGGGACAAGGCAGATGGCGGATGGAACAGCAGCAGCAAGGGTGGGAGCTCCGGCAATGGTGGGTG
TTTGATGGATGCGCCTCTGGGCATAATGATGAAGCTCTCAAACACCGTTTCTCCATGGTTGCGTGCGCTTCACAAGGGTT
ATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4601.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis