Browse Element(s) Details


OsAffx.4602.1.S1_at

Description tigr:9633.m04001
TID=OsAffx.4602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4307010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4602.1.S1_at--1083--4691NONE
GCGGCGGCGCCGAAATCAATGCAAA
NONE
OsAffx.4602.1.S1_at--254--291Chr05:24936515..24936539 (25 bp)
ATACGACGAGTGCAACGCGGAAGTT
LOC_Os05g43070
OsAffx.4602.1.S1_at--969--8991Chr05:24936470..24936494 (25 bp)
TGAAGAGCTGAACTCTGCACTGCCC
LOC_Os05g43070
OsAffx.4602.1.S1_at--390--9031Chr05:24936455..24936479 (25 bp)
TGCACTGCCCGAGGAGGAACACTAC
LOC_Os05g43070
OsAffx.4602.1.S1_at--651--8151Chr05:24936440..24936464 (25 bp)
GGAACACTACTACTGTGTCCAGTTC
LOC_Os05g43070
OsAffx.4602.1.S1_at--724--9531Chr05:24936387..24936411 (25 bp)
TCTATACCGTTCACCGCATGTACTT
LOC_Os05g43070
OsAffx.4602.1.S1_at--994--7011Chr05:24936368..24936392 (25 bp)
GTACTTTATGCATGACACCAATCCA
LOC_Os05g43070
OsAffx.4602.1.S1_at--303--6191Chr05:24935898..24935922 (25 bp)
GAGGACAGAGACTACCCGATCACTA
LOC_Os05g43070
OsAffx.4602.1.S1_at--1034--6511Chr05:24935866..24935890 (25 bp)
GATTTTTTCAATGCGGTTTGCCGGC
LOC_Os05g43070
OsAffx.4602.1.S1_at--704--7871Chr05:24935812..24935836 (25 bp)
GGTTTACGGGTTTGTGGCGATCCAT
LOC_Os05g43070
OsAffx.4602.1.S1_at--535--2731Chr05:24935770..24935794 (25 bp)
AAGGAATTACGTCTTCAACCGCTCT
LOC_Os05g43070
Target Sequence 
GCGGCGGCGCCGAAATCAATGCAAAATACGACGAGTGCAACGCGGAAGTTGAGGAATGCATGAGAAAAACTGAAGAGCTG
AACTCTGCACTGCCCGAGGAGGAACACTACTACTGTGTCCAGTTCCTACCTCGCTCTCTTCCGGAACCACTCTTCTATAC
CGTTCACCGCATGTACTTTATGCATGACACCAATCCAACTTCTCTAGGTAACAAATTATACACGAACCTTGAGGACAGAG
ACTACCCGATCACTATGATCCAGATTTTTTCAATGCGGTTTGCCGGCGACGGCGTCCAACTTGATCAGTCGATGAGGGTT
TACGGGTTTGTGGCGATCCATGATGAACTGGATTGCCGAAGGAATTACGTCTTCAACCGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis