Browse Element(s) Details


OsAffx.4613.1.S1_at

Description tigr:9633.m04171
TID=OsAffx.4613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4464010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44610Os.17396.1.S1_at10/115+25869547..25872622expressed protein
LOC_Os05g44620Os.20602.2.S1_x_at11/115+25874644..25877070hAT family dimerisation domain containing protein, expressed
LOC_Os05g44630NANA5+25879043..25881278IQ calmodulin-binding motif family protein, expressed
LOC_Os05g44640OsAffx.4613.1.S1_at10/115+25884520..25885710hypothetical protein
LOC_Os05g44650NANA5+25888188..25888853hypothetical protein
LOC_Os05g44660NANA5+25889971..25891914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44670OsAffx.20354.1.S1_at1/115+25892744..25894283retrotransposon protein, putative, unclassified
LOC_Os05g44680NANA5+25897860..25898843retrotransposon protein, putative, unclassified
LOC_Os05g44690OsAffx.21870.2.S1_x_at11/115+25903738..25905076hypothetical protein
LOC_Os05g44690OsAffx.21870.3.S1_x_at11/115+25903738..25905076hypothetical protein
LOC_Os05g44700NANA5+25906259..25907928retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4613.1.S1_at--630--10811Chr05:25884718..25884742 (25 bp)
TTGTCGCCCGTATGGATCGAGGCAT
LOC_Os05g44640
OsAffx.4613.1.S1_at--666--6931Chr05:25884838..25885240 (25 bp)
GTAGGGATGCCGACGAACTCCTCAT
LOC_Os05g44640
OsAffx.4613.1.S1_at--1138--1171Chr05:25885256..25885280 (25 bp)
AGTACGAGAAGTTTCCGCTGGCGCT
LOC_Os05g44640
OsAffx.4613.1.S1_at--881--311Chr05:25885302..25885326 (25 bp)
ATACGCGTGCCACATGCTGGTCCGT
LOC_Os05g44640
OsAffx.4613.1.S1_at--500--7211Chr05:25885344..25885368 (25 bp)
GTCGTTGTCGCCGTTACGGTATCAG
LOC_Os05g44640
OsAffx.4613.1.S1_at--405--10471Chr05:25885357..25885381 (25 bp)
TTACGGTATCAGCTCACCGAGTCAG
LOC_Os05g44640
OsAffx.4613.1.S1_at--335--6091Chr05:25885375..25885399 (25 bp)
GAGTCAGCCGCGGAAAAGCCCAGAT
LOC_Os05g44640
OsAffx.4613.1.S1_at--674--2411Chr05:25885402..25885426 (25 bp)
AAAAATGAGGTCTTGCTCCCGTTGC
LOC_Os05g44640
OsAffx.4613.1.S1_at--249--7791Chr05:25885445..25885469 (25 bp)
GGTGCCACCCATGCTACTGGTGTAG
LOC_Os05g44640
OsAffx.4613.1.S1_at--46--8411Chr05:25885490..25885514 (25 bp)
GGCGCCACTGCTTTCGCTTTGTGGA
LOC_Os05g44640
OsAffx.4613.1.S1_at--59--4891NONE
GCTTTGTGGATAGGCGTGCTCAGAT
NONE
Target Sequence 
TTGTCGCCCGTATGGATCGAGGCATCGCTGGGAGAGGGTAGAGGTTGTGGCGCCTGGGAGATAGAGGGGAGAGGCAGCAC
CGCCAAGGAGCACATCGCTGGTGATGGGTTGATGGAAGGTGTAGGGATGCCGACGAACTCCTCATCGTCGTCTGAGAGAA
AGTACGAGAAGTTTCCGCTGGCGCTCATCTGCTCCTCGGATACCCCATACGCGTGCCACATGCTGGTCCGTTCGCCACGG
CATGCCACGTCGTTGTCGCCGTTACGGTATCAGCTCACCGAGTCAGCCGCGGAAAAGCCCAGATCCAAAAATGAGGTCTT
GCTCCCGTTGCGCCTCGCGGTCCCGACGCGGTGCCACCCATGCTACTGGTGTAGGCGTGGGCTCCCTCGTTGTCGGCGCC
ACTGCTTTCGCTTTGTGGATAGGCGTGCTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis