Browse Element(s) Details


Os.27643.1.A1_at

Description gb:CB681357
DB_XREF= gi:29685082
DB_XREF=OSJNEf07H23.r
CLONE=OSJNEf07H23
TID=Os.27643.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27643 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180145.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4459011/11ATP-dependent protease La, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44610Os.17396.1.S1_at10/115+25869547..25872622expressed protein
LOC_Os05g44620Os.20602.2.S1_x_at11/115+25874644..25877070hAT family dimerisation domain containing protein, expressed
LOC_Os05g44630NANA5+25879043..25881278IQ calmodulin-binding motif family protein, expressed
LOC_Os05g44640OsAffx.4613.1.S1_at10/115+25884520..25885710hypothetical protein
LOC_Os05g44650NANA5+25888188..25888853hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27643.1.A1_at--204--4751Chr05:25863805..25863829 (25 bp)
GCTGATTAGGCTCATTTGGCTGCTA
LOC_Os05g44590
Os.27643.1.A1_at--1157--8311Chr05:25863822..25863846 (25 bp)
GGCTGCTAGGAAAACAATGCTCCAT
LOC_Os05g44590
Os.27643.1.A1_at--909--3011Chr05:25863837..25863861 (25 bp)
AATGCTCCATGTAACCTGGTTTTCG
LOC_Os05g44590
Os.27643.1.A1_at--1087--7051Chr05:25863847..25863871 (25 bp)
GTAACCTGGTTTTCGTTGATCATAA
LOC_Os05g44590
Os.27643.1.A1_at--22--6831Chr05:25863921..25863945 (25 bp)
GTTTATCACTCTGTGTTGACATGAT
LOC_Os05g44590
Os.27643.1.A1_at--373--5671Chr05:25863938..25863962 (25 bp)
GACATGATTTGAACTATGGCAGTCT
LOC_Os05g44590
Os.27643.1.A1_at--914--8871Chr05:25864085..25864109 (25 bp)
TGATGGCAATCCTTCAACGGTTCAC
LOC_Os05g44590
Os.27643.1.A1_at--477--3711Chr05:25864489..25864513 (25 bp)
CTAGTTCTCCGTACCTGAGTAGTGG
LOC_Os05g44590
Os.27643.1.A1_at--43--1111Chr05:25864509..25864533 (25 bp)
AGTGGTCGTTGTGACGATCGCTATA
LOC_Os05g44590
Os.27643.1.A1_at--23--271Chr05:25864531..25864555 (25 bp)
ATAGAATAACCACTTCCTCCTGTGT
LOC_Os05g44590
Os.27643.1.A1_at--1054--3311Chr05:25864541..25864565 (25 bp)
CACTTCCTCCTGTGTGTATTACACA
LOC_Os05g44590
Target Sequence 
GCTGATTAGGCTCATTTGGCTGCTAGGAAAACAATGCTCCATGTAACCTGGTTTTCGTTGATCATAAACATTATTTGGAA
ATGGCGTGTAGTTACATCAAAGAATTTCAATACAAAGTTTATCACTCTGTGTTGACATGATTTGAACTATGGCAGTCTNT
CATAGCAAAGCGTAGCGACATGGTAGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCC
ATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGA
TACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATTTGCG
ACCGAGATCCTTTTGGGGGATCCGTAGCTCCCTTTTTNTTATGAAGTTATGGAAAACACTTTATTCTNTGGTCCATAGGC
CTAGTTCTCCGTACCTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27643.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis