Browse Element(s) Details


Os.24593.1.S1_at

Description gb:AK066030.1
DB_XREF= gi:32976048
TID=Os.24593.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044E12, full insert sequence.
FL= gb:AK066030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4459010/11ATP-dependent protease La, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44610Os.17396.1.S1_at10/115+25869547..25872622expressed protein
LOC_Os05g44620Os.20602.2.S1_x_at11/115+25874644..25877070hAT family dimerisation domain containing protein, expressed
LOC_Os05g44630NANA5+25879043..25881278IQ calmodulin-binding motif family protein, expressed
LOC_Os05g44640OsAffx.4613.1.S1_at10/115+25884520..25885710hypothetical protein
LOC_Os05g44650NANA5+25888188..25888853hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24593.1.S1_at--464--7971Chr05:25864347..25864371 (25 bp)
GGATCCGTAGCTCCCAAATTGCAGA
LOC_Os05g44590
Os.24593.1.S1_at--71--6971Chr05:25864353..25864377 (25 bp)
GTAGCTCCCAAATTGCAGATGATGC
LOC_Os05g44590
Os.24593.1.S1_at--328--651Chr05:25864374..25864398 (25 bp)
ATGCACAAGAACTAGATCAGGACGA
LOC_Os05g44590
Os.24593.1.S1_at--128--6431Chr05:25864388..25864412 (25 bp)
GATCAGGACGAATGATGCTCCGTGT
LOC_Os05g44590
Os.24593.1.S1_at--1016--5271Chr05:25864397..25864421 (25 bp)
GAATGATGCTCCGTGTACAGTAGTA
LOC_Os05g44590
Os.24593.1.S1_at--98--6331Chr05:25864401..25864425 (25 bp)
GATGCTCCGTGTACAGTAGTAAACT
LOC_Os05g44590
Os.24593.1.S1_at--194--7451Chr05:25864409..25864433 (25 bp)
GTGTACAGTAGTAAACTTTGTGTGC
LOC_Os05g44590
Os.24593.1.S1_at--459--9151NONE
TGCCCCTCCCTTTTTTCTTATGAAG
NONE
Os.24593.1.S1_at--834--8751Chr05:25864609..25864633 (25 bp)
TGTAGTGTTACTAGAAATCCATAGT
LOC_Os05g44590
Os.24593.1.S1_at--1017--6491Chr05:25864648..25864672 (25 bp)
GATATGATCAGATGTTTCAAGCAAT
LOC_Os05g44590
Os.24593.1.S1_at--14--3211Chr05:25864669..25864693 (25 bp)
CAATGGTTTGACATGTCTTATGAGC
LOC_Os05g44590
Target Sequence 
GGATCCGTAGCTCCCAAATTGCAGATGATGCACAAGAACTAGATCAGGACGAATGATGCTCCGTGTACAGTAGTAAACTT
TGTGTGCCCCTCCCTTTTTTCTTATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTNTCCGTACCTG
ANTNNNNNNCNNNNTNNNNNTNNNTNTANNANANNNNCNTNNNCNTNTGNNNANNNNNCNNCCNNNNNNTTNTNNNAAAG
TTCCGTCACAGAATTTTCTGAAATGTAGTGTTACTAGAAATCCATAGTACAAGATGAATGATGATATGATCAGATGTTTC
AAGCAATGGTTTGACATGTCTTATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis