Browse Element(s) Details


Os.27617.1.S1_at

Description gb:AK066592.1
DB_XREF= gi:32976610
TID=Os.27617.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072D05, full insert sequence.
FL= gb:AK066592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4458011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44540OsAffx.27308.1.S1_at11/115+25827636..25828684BTB/POZ domain containing protein
LOC_Os05g44550OsAffx.27309.1.S1_at11/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.1.S1_x_at2/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.2.S1_x_at1/115+25830056..25832629hypothetical protein
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44610Os.17396.1.S1_at10/115+25869547..25872622expressed protein
LOC_Os05g44620Os.20602.2.S1_x_at11/115+25874644..25877070hAT family dimerisation domain containing protein, expressed
LOC_Os05g44630NANA5+25879043..25881278IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27617.1.S1_at--296--5051Chr05:25855114..25855138 (25 bp)
GCAGAAATCCATGTCACGCATTTGT
LOC_Os05g44580
Os.27617.1.S1_at--285--7612Chr05:25855151..25855175 (25 bp)
GGGAATGTTGTGTGCTGTCCTTTCA
LOC_Os05g44580
Os.27617.1.S1_at--145--7271Chr05:25855167..25855191 (25 bp)
GTCCTTTCAAATCCAGTTGCAGATA
LOC_Os05g44580
Os.27617.1.S1_at--739--10611Chr05:25855254..25855278 (25 bp)
TTCTGGCCAGATTATTCCCTTGCGA
LOC_Os05g44580
Os.27617.1.S1_at--464--9031Chr05:25855387..25855411 (25 bp)
TGCACTTGATCAGGCGTCGCAGCAA
LOC_Os05g44580
Os.27617.1.S1_at--1029--7211Chr05:25855402..25855426 (25 bp)
GTCGCAGCAACAGAACCCTGGAGTT
LOC_Os05g44580
Os.27617.1.S1_at--793--5591Chr05:25855431..25855455 (25 bp)
GAAATTTCCACATTGCCAGATGCCA
LOC_Os05g44580
Os.27617.1.S1_at--234--6291Chr05:25855457..25855481 (25 bp)
GATGTTCCTAAGAAGTTCTCTCAGT
LOC_Os05g44580
Os.27617.1.S1_at--19--5551Chr05:25855483..25855507 (25 bp)
GAAACTATTATTGGCTCCGTGCGAG
LOC_Os05g44580
Os.27617.1.S1_at--89--1211Chr05:25855509..25855533 (25 bp)
AGTTTGCTAACCCTTCAAGTGCTTC
LOC_Os05g44580
Os.27617.1.S1_at--908--5371Chr05:25855540..25855564 (25 bp)
GAAGAATCCATTTTACTCCAGAGAC
LOC_Os05g44580
Target Sequence 
GCAGAAATCCATGTCACGCATTTGTGGTCGAGCTTCAGGGAATGTTGTGTGCTGTCCTTTCAAATCCAGTTGCAGATAAG
TTAGATATATGGAAGTGGGATCATGGTCTGTGGAGTATAGCATATGCAATCAATTTAAAATTCTGGCCAGATTATTCCCT
TGCGACAAATGTTGTAGTGCCTCTCGCAGTTGACCCAATAGATGGAAAGGTTCTACTGAATACTGGGAGGAAGCTTGGTT
TATATAATCCATGTGAGCAAACAATCGAAAACTTGCACTTGATCAGGCGTCGCAGCAACAGAACCCTGGAGTTAACAGAA
ATTTCCACATTGCCAGATGCCAAGATGTTCCTAAGAAGTTCTCTCAGTGGAAACTATTATTGGCTCCGTGCGAGAAGTTT
GCTAACCCTTCAAGTGCTTCATCAGGGAAGAATCCATTTTACTCCAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis