Browse Element(s) Details


Os.17396.1.S1_at

Description gb:AK070182.1
DB_XREF= gi:32980206
TID=Os.17396.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045H17, full insert sequence.
FL= gb:AK070182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4461010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44610Os.17396.1.S1_at10/115+25869547..25872622expressed protein
LOC_Os05g44620Os.20602.2.S1_x_at11/115+25874644..25877070hAT family dimerisation domain containing protein, expressed
LOC_Os05g44630NANA5+25879043..25881278IQ calmodulin-binding motif family protein, expressed
LOC_Os05g44640OsAffx.4613.1.S1_at10/115+25884520..25885710hypothetical protein
LOC_Os05g44650NANA5+25888188..25888853hypothetical protein
LOC_Os05g44660NANA5+25889971..25891914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44670OsAffx.20354.1.S1_at1/115+25892744..25894283retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17396.1.S1_at--790--1871Chr05:25872058..25872082 (25 bp)
ACGATGTATCACACAACTCACACTC
LOC_Os05g44610
Os.17396.1.S1_at--919--2534Chr07:17435974..17435998 (25 bp)
AACTCACACTCACTGGTGCTTTGTC
NONE
Os.17396.1.S1_at--373--7271Chr05:25872125..25872149 (25 bp)
GTGCCAATAATCACATCAGCTTGGG
LOC_Os05g44610
Os.17396.1.S1_at--422--391Chr05:25872139..25872163 (25 bp)
ATCAGCTTGGGAGATGTCTTCCTGA
LOC_Os05g44610
Os.17396.1.S1_at--168--771Chr05:25872152..25872176 (25 bp)
ATGTCTTCCTGATGCGGTGGGCAAA
LOC_Os05g44610
Os.17396.1.S1_at--70--3431Chr05:25872257..25872281 (25 bp)
CAGACTTGTTCTGTACATGTTTATT
LOC_Os05g44610
Os.17396.1.S1_at--347--5651Chr05:25872292..25872316 (25 bp)
GACAGAGTGACATGTTGCACTATCA
LOC_Os05g44610
Os.17396.1.S1_at--719--9831Chr05:25872504..25872528 (25 bp)
TAAATAGTGCCACACGGTCCAATCT
LOC_Os05g44610
Os.17396.1.S1_at--338--471Chr05:25872525..25872549 (25 bp)
ATCTCCGGTAAAACTGTCAGCTTGA
LOC_Os05g44610
Os.17396.1.S1_at--178--8191Chr05:25872565..25872589 (25 bp)
GGAACCATGAACTCAATGTCTTGCT
LOC_Os05g44610
Os.17396.1.S1_at--133--2991NONE
AATGTCTTGCTGCATTGAGGTAATA
NONE
Target Sequence 
ACGATGTATCACACAACTCACACTCACTGGTGCTTTGTCCAGCNCCAAACCTCAGCACCAGATTTTTGTGCCAATAATCA
CATCAGCTTGGGAGATGTCTTCCTGATGCGGTGGGCAAAGGTATCGNGGGCCATGGAACCGNTTGATAGCCCGAGGAGCA
AGAGGGATTTACANGAGGTGGAGGACAGGGAACGCATCNCAGACTTGTTCTGTACATGTTTATTAGATCATTGTGACAGA
GTGACATGTTGCACTATCAAGTACCAATAGTTGGTTGGGATTGGAATGATCAAAATGAGTTGTTCATGTTTTAGAAGGCT
GTGTGTTTCTCCATTTTAGTTTAGATTTGAGAAGGTTCTAGGTTTTTCCTTTAACCTTTTCACTCTGTTTCTCGCCCAAC
ATAACTCAGTTTTTNCTCTTTTTCACTCTGTTTAATTTATCAATTTCTAAATAGTGCCACACGGTCCAATCTCCGGTAAA
ACTGTCAGCTTGAGAAAAGTGATGTGGAGGAACCATGAACTCAATGTCTTGCTGCATTGAGGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis