Browse Element(s) Details


Os.9897.1.S1_at

Description gb:AK063238.1
DB_XREF= gi:32973256
TID=Os.9897.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G01, full insert sequence.
FL= gb:AK063238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g446009/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44610Os.17396.1.S1_at10/115+25869547..25872622expressed protein
LOC_Os05g44620Os.20602.2.S1_x_at11/115+25874644..25877070hAT family dimerisation domain containing protein, expressed
LOC_Os05g44630NANA5+25879043..25881278IQ calmodulin-binding motif family protein, expressed
LOC_Os05g44640OsAffx.4613.1.S1_at10/115+25884520..25885710hypothetical protein
LOC_Os05g44650NANA5+25888188..25888853hypothetical protein
LOC_Os05g44660NANA5+25889971..25891914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44670OsAffx.20354.1.S1_at1/115+25892744..25894283retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9897.1.S1_at--513--1831Chr05:25866961..25866981 (21 bp)
ACGCCCTCTCTCTCTACGAGGGATG
LOC_Os05g44600
Os.9897.1.S1_at--509--9511NONE
TCTCTCTCTACGAGGGATGTCACGT
NONE
Os.9897.1.S1_at--564--3771NONE
CTCTCTACGAGGGATGTCACGTGCA
NONE
Os.9897.1.S1_at--156--10831Chr05:25868836..25868860 (25 bp)
TTGGAGTGGGTCAAGTTGTAGCACC
LOC_Os05g44600
Os.9897.1.S1_at--76--2811Chr05:25868848..25868872 (25 bp)
AAGTTGTAGCACCACGTAGGAGAGA
LOC_Os05g44600
Os.9897.1.S1_at--388--8051Chr05:25868866..25868890 (25 bp)
GGAGAGAAACACAGCTCACTCGACT
LOC_Os05g44600
Os.9897.1.S1_at--683--5531Chr05:25868871..25868895 (25 bp)
GAAACACAGCTCACTCGACTATTAG
LOC_Os05g44600
Os.9897.1.S1_at--601--2471Chr05:25868873..25868897 (25 bp)
AACACAGCTCACTCGACTATTAGTT
LOC_Os05g44600
Os.9897.1.S1_at--600--1451Chr05:25868927..25868951 (25 bp)
AGAAGTGGCAGATAAACACTCTGAT
LOC_Os05g44600
Os.9897.1.S1_at--778--2471Chr05:25868941..25868965 (25 bp)
AACACTCTGATTTGATTCGATTGCA
LOC_Os05g44600
Os.9897.1.S1_at--80--10791Chr05:25868952..25868976 (25 bp)
TTGATTCGATTGCAGATTTCAACTT
LOC_Os05g44600
Target Sequence 
ACGCCCTCTCTCTCTACGAGGGATGTCACGTGCANGCGATCGCGCGNANCTACGGANCCCTGACGGCNCAGAACCGGATG
AGCATCCTGGAGGACACGGGTTTCTNCGTTCGTCAACTGCCGCGTGACNGGCTCCGGCGCCCTCTACCTCGGCCGNGCCT
GGGGCACCTTCTCCCGCGTCGTCTTCGCCTNNACCTACATGGACAACATCATCATCCCCCGCGGCTGGTACAACTGGGGC
GATCCCACCCGCGAGATGACGGTGTTCTACGGGCAGTACAAGTGCACGGGGCCGGGTTCGAACTACGCCGGGANGGTGGC
GTGGTCGANGGAGCTCACGGACCAGGAGGCCAAGCCGTTCATCTCCCTCAGCTTCATCGACGGGTTGGAGTGGGTCAAGT
TGTAGCACCACGTAGGAGAGAAACACAGCTCACTCGACTATTAGTTNACTTGTGAAGAGAAAAGAATAGNAACAGAAGAA
GTGGCAGATAAACACTCTGATTTGATTCGATTGCAGATTTCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis