Browse Element(s) Details


Os.18241.1.S1_at

Description gb:AK065361.1
DB_XREF= gi:32975379
TID=Os.18241.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013014A12, full insert sequence.
FL= gb:AK065361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g445609/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44500OsAffx.31869.1.S1_at10/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.5.S1_x_at5/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_x_at4/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_at3/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_s_at1/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.4.S1_x_at1/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44510Os.10731.1.A1_a_at5/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44510Os.48015.1.A1_x_at1/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_x_at4/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_at3/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44530OsAffx.15102.1.S1_at10/115+25826086..25826825BTB/POZ domain containing protein
LOC_Os05g44540OsAffx.27308.1.S1_at11/115+25827636..25828684BTB/POZ domain containing protein
LOC_Os05g44550OsAffx.27309.1.S1_at11/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.1.S1_x_at2/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.2.S1_x_at1/115+25830056..25832629hypothetical protein
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18241.1.S1_at--1060--6831Chr05:25836228..25836252 (25 bp)
GTTTCTCTGGAGGAACCGACTATTC
LOC_Os05g44560
Os.18241.1.S1_at--452--2611Chr05:25836215..25836239 (25 bp)
AACCGACTATTCTGTTGGCTGTGCT
LOC_Os05g44560
Os.18241.1.S1_at--367--10391Chr05:25836177..25836201 (25 bp)
TTTTCCCAAATTCCTGCTCAGATAG
LOC_Os05g44560
Os.18241.1.S1_at--939--1251Chr05:25836159..25836182 (24 bp)
AGATAGAACCGCAGATACCTCCATT
LOC_Os05g44560
Os.18241.1.S1_at--937--3091Chr05:25835946..25835970 (25 bp)
AATAGCTCGATTCAGTCTCACAAAG
LOC_Os05g44560
Os.18241.1.S1_at--716--2911Chr05:25835888..25835912 (25 bp)
AAGGATACTGCTCCGAAGACTCCAA
LOC_Os05g44560
Os.18241.1.S1_at--615--6211Chr05:25835479..25835503 (25 bp)
GAGGCTCTTCACTGAGGGCATCTAA
LOC_Os05g44560
Os.18241.1.S1_at--358--3811Chr05:25835432..25835456 (25 bp)
CTCCGGTTGCTCAGTTGTATTTTGT
LOC_Os05g44560
Os.18241.1.S1_at--399--8951Chr05:25835300..25835324 (25 bp)
TGACTCATCCTTTGCTCATACAGAT
LOC_Os05g44560
Os.18241.1.S1_at--367--8771Chr05:25835238..25835262 (25 bp)
TGTTTCCCCTGTACTTCAATTTTTG
NONE
Os.18241.1.S1_at--767--8731Chr05:25835215..25835239 (25 bp)
TGTCATGGTTACTGCATCTCTGGAA
NONE
Target Sequence 
GTTTCTCTGGAGGAACCGACTATTCTGTTGGCTGTGCTGCCGGTGCCAGCGTTTTCCCAAATTCCTGCTCAGATAGAACC
GCAGATACCTCCATTAGGAGAATTTCATCACGAATAGCTCGATTCAGTCTCACAAAGAATGGACAACCAGCAACATCCAG
ACCAAAACCAAAGGATACTGCTCCGAAGACTCCAAATCAAACGAGAGTTCAATCGAGCCAATTGATAGGAGGCTCTTCAC
TGAGGGCATCTAAAAGGTGGCAGAAGTAGAGCACGCTCCGGTTGCTCAGTTGTATTTTGTATGTCCAGAATGTGAAAATA
GGCGAAGTAGCTGTAGGAGACAATGTACTTGTAAGTTGTAACTCTACAGATGTGAGAGCATTCTGCTGACGAAGGACGAG
CAGCTGATGACTCATCCTTTGCTCATACAGATCAAATATCCAGGAAAGGATTCCCTTTTCTGTTCTCCATGTTTCCCCTG
TACTTCAATTTTTGTCATGGTTACTGCATCTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis