Browse Element(s) Details


OsAffx.4677.1.S1_s_at

Description tigr:9633.m04754
TID=OsAffx.4677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5050011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50470Os.55486.1.S1_at11/115+28850020..28851335expressed protein
LOC_Os05g50480Os.8172.1.S1_at11/115+28857095..28865111expressed protein
LOC_Os05g50490Os.5652.1.S1_at11/115+28867581..28869482glucan endo-1,3-beta-glucosidase, putative, expressed
LOC_Os05g50500OsAffx.4677.1.S1_s_at11/115+28874263..28875380expressed protein
LOC_Os05g50510Os.50276.1.S1_at11/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_at3/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_x_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510OsAffx.17241.1.S1_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein
LOC_Os05g50540Os.28943.1.S1_x_at4/115+28896949..28898187retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4677.1.S1_s_at--1097--4692Chr01:34129395..34129501 (25 bp)
GCGGCGGCGCTGACTCAGCAGCAAC
NONE
OsAffx.4677.1.S1_s_at--417--5191Chr05:28874471..28874495 (25 bp)
GCAATGTGAGGCAGCAAGCAAGGCA
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--139--5191Chr05:28874449..28874473 (25 bp)
GCAAGGGCAGTTTGGGTATCACGCA
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--116--1211Chr05:28874441..28874465 (25 bp)
AGTTTGGGTATCACGCATCCACGCG
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--325--4631Chr05:28874417..28874441 (25 bp)
GCGTCGCTTCCCATGTAATTAATCC
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--908--7711Chr05:28874366..28874390 (25 bp)
GGGTGGGTCATTACCTCGCCTCTAA
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--819--9971Chr05:28874355..28874379 (25 bp)
TACCTCGCCTCTAATCGTGGTTGAA
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--789--4291Chr05:28874348..28874372 (25 bp)
CCTCTAATCGTGGTTGAAGGCGAAT
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--1040--5271Chr05:28874333..28874357 (25 bp)
GAAGGCGAATTACCGGTCGCTGTCC
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--91--7811Chr05:28874319..28874343 (25 bp)
GGTCGCTGTCCAAGCTATTTTGTAT
LOC_Os05g50500
OsAffx.4677.1.S1_s_at--647--6911Chr05:28874298..28874322 (25 bp)
GTATGTCATTACTGTGGGTTAATCA
LOC_Os05g50500
Target Sequence 
GCGGCGGCGCTGACTCAGCAGCAACCACCGGCCGCGCTGGCTGGCTCCACGTCAGCCGGCGACGGGTCCAGGGTGGCAAT
GTGAGGCAGCAAGCAAGGCAAGGGCAGTTTGGGTATCACGCATCCACGCGCGTCGCTTCCCATGTAATTAATCCACTATT
AGCGACGATAATTAAGTATGGGGTGGGTCATTACCTCGCCTCTAATCGTGGTTGAAGGCGAATTACCGGTCGCTGTCCAA
GCTATTTTGTATGTCATTACTGTGGGTTAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4677.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis