Browse Element(s) Details


OsAffx.4776.1.S1_s_at

Description tigr:9634.m00865
TID=OsAffx.4776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ligand-gated ion channel protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0912011/11Ligand-gated ion channel family protein, expressed
LOC_Os06g089102/11Ligand-gated ion channel family protein, expressed
LOC_Os06g090502/11hypothetical protein
LOC_Os06g090901/11Ligand-gated ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09060Os.29067.2.S1_at4/116+4557431..4562454retrotransposon protein, putative, unclassified
LOC_Os06g09069NANA6+4564943..4565300NA
LOC_Os06g09080Os.46459.1.S1_at1/116+4567260..4568265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09090Os.27742.2.S1_a_at11/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09090OsAffx.4776.1.S1_s_at1/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09100OsAffx.15327.1.S1_at10/116+4576644..4577866hypothetical protein
LOC_Os06g09110OsAffx.15328.1.S1_at11/116+4582309..4584737hypothetical protein
LOC_Os06g09110OsAffx.27792.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09110Os.23021.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09120OsAffx.4776.1.S1_s_at11/116+4586798..4590084Ligand-gated ion channel family protein, expressed
LOC_Os06g09130Os.54329.1.S1_at11/116+4592917..4596946Ligand-gated ion channel family protein, expressed
LOC_Os06g09140NANA6+4603421..4604035hypothetical protein
LOC_Os06g09150NANA6+4604515..4605856transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160OsAffx.30261.2.S1_s_at11/116+4606807..4607109hypothetical protein
LOC_Os06g09170Os.53571.1.S1_at11/116+4611262..4614893Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4776.1.S1_s_at--634--2291Chr06:4587365..4587389 (25 bp)
AAATGGTTTGGCACAACGGCTGCCC
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--1104--2691Chr06:4587336..4587360 (25 bp)
AAGCTATGCAATTCCTAACACAGAT
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--110--9832Chr06:4587321..4587345 (25 bp)
TAACACAGATTCGACACCTCTTACA
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--871--6071Chr06:4587291..4587315 (25 bp)
GAGTTTCTCTGGTCTTTTCATCATC
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--949--7991Chr06:4587263..4587287 (25 bp)
GGATGTATCTCAGCTCTCATGCTGA
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--82--4931Chr06:4587232..4587256 (25 bp)
GCATTTCTAAGTCAGTTCTTGCCAA
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--624--10753Chr06:4587070..4587094 (25 bp)
TTGACAGTTCCCAGGATATCCATGG
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--180--10134Chr06:4587054..4587078 (25 bp)
TATCCATGGGAGTGTCGAACGTGCT
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--920--852Chr06:4587001..4587025 (25 bp)
ATGGCTCTGTGCCTGCAAATTCCAG
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--618--5131Chr06:4586987..4587011 (25 bp)
GCAAATTCCAGCCAGACCGGATGAA
LOC_Os06g09120
OsAffx.4776.1.S1_s_at--538--6651Chr06:4586947..4586971 (25 bp)
GTTGACACTGTCACACGGAGCGTGC
LOC_Os06g09120
Target Sequence 
AAATGGTTTGGCACAACGGCTGCCCCTCCAAGCTATGCAATTCCTAACACAGATTCGACACCTCTTACATTGCAGAGTTT
CTCTGGTCTTTTCATCATCACTGGATGTATCTCAGCTCTCATGCTGATGATAAGCATTTCTAAGTCAGTTCTTGCCAATT
ACACCAGAATTAGAGATTCTGAAGTGCGAAGTCCCGATGCGGATGGTGGAAATGGAGGTCGCGAAGAACGTAACTCAGCA
CAAAACGTCATGGGTGATGGCTATGTGGATGATCGACCTCACCATGAAATCAGAATTGACAGTTCCCAGGATATCCATGG
GAGTGTCGAACGTGCTGACGGCGAAGAGCCTGGACCAATTCAGAATGGCTCTGTGCCTGCAAATTCCAGCCAGACCGGAT
GAATACTGACAAAAAGATGTTGACACTGTCACACGGAGCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4776.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis