Browse Element(s) Details


OsAffx.4779.1.S1_at

Description tigr:9634.m00881
TID=OsAffx.4779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0930011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4779.1.S1_at--1013--2751Chr06:4672598..4672622 (25 bp)
GAACCCTTCCCTATATCGGTAGCTG
LOC_Os06g09300
OsAffx.4779.1.S1_at--657--10151Chr06:4672585..4672609 (25 bp)
TATCGGTAGCTGTCACGACCACCAA
LOC_Os06g09300
OsAffx.4779.1.S1_at--378--9531Chr06:4672543..4672567 (25 bp)
TCTCACGTCGGGAACGCGGCGGATC
LOC_Os06g09300
OsAffx.4779.1.S1_at--870--7751Chr06:4672140..4672164 (25 bp)
GGTGTTGTACGCAGCAGATGCTTCG
LOC_Os06g09300
OsAffx.4779.1.S1_at--1150--5031Chr06:4672127..4672151 (25 bp)
GCAGATGCTTCGCTTTTGATGGGAA
LOC_Os06g09300
OsAffx.4779.1.S1_at--1108--10731Chr06:4672112..4672136 (25 bp)
TTGATGGGAAAGTCGCAGATTTGGA
LOC_Os06g09300
OsAffx.4779.1.S1_at--925--5151Chr06:4672026..4672050 (25 bp)
GCAACCAGTCATCCGCCGCGAAATG
LOC_Os06g09300
OsAffx.4779.1.S1_at--815--10391Chr06:4671994..4672018 (25 bp)
TTTTGCGCCACATCTCTCGATCGGT
LOC_Os06g09300
OsAffx.4779.1.S1_at--58--1711Chr06:4671959..4671983 (25 bp)
ACCAACACCGGGATGTCATGTCACT
LOC_Os06g09300
OsAffx.4779.1.S1_at--1060--7651Chr06:4671950..4671974 (25 bp)
GGGATGTCATGTCACTGGCAACGCC
LOC_Os06g09300
OsAffx.4779.1.S1_at--909--8731Chr06:4671941..4671965 (25 bp)
TGTCACTGGCAACGCCCCGGAATAG
LOC_Os06g09300
Target Sequence 
GAACCCTTCCCTATATCGGTAGCTGTCACGACCACCAATCGCGGCCTCGTCCGCCTCTCACGTCGGGAACGCGGCGGATC
ACGCGACGAGCGCAGGTGGGTGTTGTACGCAGCAGATGCTTCGCTTTTGATGGGAAAGTCGCAGATTTGGAGGGACGAGA
CGAGACAGGCGGGGCACCGGGACGAGGCAGCAAGCAGGAGACGCGGGCGGCAGCAACCAGTCATCCGCCGCGAAATGCCG
GGGCTTTTGCGCCACATCTCTCGATCGGTCGCACCCCGCACCAACACCGGGATGTCATGTCACTGGCAACGCCCCGGAAT
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis