Browse Element(s) Details


OsAffx.4797.1.S1_at

Description tigr:9634.m01080
TID=OsAffx.4797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY056779 AT5g47810MCA23_13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1108011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein
LOC_Os06g11050OsAffx.15366.1.S1_at9/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050Os.54550.1.S1_at1/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060Os.18657.1.S1_at11/116+5799189..5799850expressed protein
LOC_Os06g11070Os.23461.1.A1_at11/116+5806277..5810130expressed protein
LOC_Os06g11070OsAffx.4796.1.S1_s_at11/116+5806277..5810130expressed protein
LOC_Os06g11080OsAffx.4797.1.S1_at11/116+5811592..5812001hypothetical protein
LOC_Os06g11090Os.49572.1.A1_at11/116+5812498..5814197esterase, putative, expressed
LOC_Os06g11100OsAffx.22063.1.S1_at1/116+5816259..5819852retrotransposon protein, putative, unclassified
LOC_Os06g11110OsAffx.20729.1.S1_x_at4/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.21171.4.S1_x_at2/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.21171.3.S1_x_at1/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.2022.1.S1_at1/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.21171.4.S1_at1/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11120OsAffx.4798.1.S1_x_at10/116+5829907..5832224hypothetical protein
LOC_Os06g11120OsAffx.24637.2.S1_x_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11120Os.50619.1.S1_x_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11120OsAffx.13605.1.S1_x_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11120Os.50619.1.S1_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11130Os.21839.1.S1_at9/116+5834563..58361072-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4797.1.S1_at--1123--8491Chr06:5811652..5811676 (25 bp)
TGGCACAGGTTCAACCAAGTGTATG
LOC_Os06g11080
OsAffx.4797.1.S1_at--121--2871Chr06:5811668..5811692 (25 bp)
AAGTGTATGACGTCGGCGCGGACAA
LOC_Os06g11080
OsAffx.4797.1.S1_at--790--3951Chr06:5811686..5811710 (25 bp)
CGGACAACATCATGCGCGGTGCGGT
LOC_Os06g11080
OsAffx.4797.1.S1_at--8--7311Chr06:5811704..5811728 (25 bp)
GTGCGGTGACGATCCACCATGAGGT
LOC_Os06g11080
OsAffx.4797.1.S1_at--1022--6351Chr06:5811714..5811738 (25 bp)
GATCCACCATGAGGTCCAGCAGCAG
LOC_Os06g11080
OsAffx.4797.1.S1_at--288--7731Chr06:5811774..5811798 (25 bp)
GGTGGAAAACACGTTGGCGTTATCA
LOC_Os06g11080
OsAffx.4797.1.S1_at--774--6611Chr06:5811786..5811830 (25 bp)
GTTGGCGTTATCAACCGCGGTGAAG
LOC_Os06g11080
OsAffx.4797.1.S1_at--303--891Chr06:5811841..5811865 (25 bp)
AGGCCATCACTGTCTGGCACGTGGA
LOC_Os06g11080
OsAffx.4797.1.S1_at--708--8211Chr06:5811878..5811902 (25 bp)
GGCAAACGGCGTCGGCCTCATTAAG
LOC_Os06g11080
OsAffx.4797.1.S1_at--472--8431Chr06:5811891..5811915 (25 bp)
GGCCTCATTAAGCTCATGGGCTGGA
LOC_Os06g11080
OsAffx.4797.1.S1_at--465--1731Chr06:5811939..5811963 (25 bp)
ACCATGCTCATCAGCCGTCGACTGT
LOC_Os06g11080
Target Sequence 
TGGCACAGGTTCAACCAAGTGTATGACGTCGGCGCGGACAACATCATGCGCGGTGCGGTGACGATCCACCATGAGGTCCA
GCAGCAGCGGCTTGCCGTGGTGGTGGCGGGGATCCCCAAGACGGTGGAAAACACGTTGGCGTTATCAACCGCGGTGAAGG
TGACGCAGGAGGCCATCACTGTCTGGCACGTGGAGGCCGAGAGCGCGGCAAACGGCGTCGGCCTCATTAAGCTCATGGGC
TGGAGCGCCAGCCACATTGCGCTCCACACCATGCTCATCAGCCGTCGACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis