Browse Element(s) Details


OsAffx.4800.1.S1_at

Description tigr:9634.m01132
TID=OsAffx.4800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1159011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11560NANA6+6126033..6128402retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11570Os.14919.1.S1_at7/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570Os.56216.1.S1_at2/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570OsAffx.29313.1.S1_at1/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11580OsAffx.27568.1.S1_at11/116+6140611..6141770hypothetical protein
LOC_Os06g11590OsAffx.4800.1.S1_at11/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_x_at1/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_at1/116+6143587..6144405expressed protein
LOC_Os06g11600OsAffx.15372.1.S1_x_at11/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11600Os.47251.1.S1_at8/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11610Os.12234.2.S1_s_at11/116+6151031..6152439Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620Os.12166.1.S1_at11/116+6154941..6158887Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630Os.22584.1.S1_at10/116+6159331..6162652F-box family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4800.1.S1_at--354--2431Chr06:6143617..6143641 (25 bp)
AAAATCTGCGAACTCCGGTGCTACC
LOC_Os06g11590
OsAffx.4800.1.S1_at--1148--5351Chr06:6143722..6143746 (25 bp)
GAAGAAGAAGTTGCGTTGCCCCGTA
LOC_Os06g11590
OsAffx.4800.1.S1_at--813--9131Chr06:6143814..6143838 (25 bp)
TGCGATTGAGCTTGCGTCCCGATGC
LOC_Os06g11590
OsAffx.4800.1.S1_at--178--2211Chr06:6143856..6143880 (25 bp)
ACAACGGCTACATTTCGTCGCGGTG
LOC_Os06g11590
OsAffx.4800.1.S1_at--336--351Chr06:6143917..6143941 (25 bp)
ATAACGGGCTGCTGCCGGTTGAACA
LOC_Os06g11590
OsAffx.4800.1.S1_at--784--8971Chr06:6143936..6143960 (25 bp)
TGAACACTGCGGATTCACGAGCAAA
LOC_Os06g11590
OsAffx.4800.1.S1_at--428--2971Chr06:6144231..6144255 (25 bp)
AATGGACCTTTTTCATGGTGCCAAT
LOC_Os06g11590
OsAffx.4800.1.S1_at--998--7272Chr06:6144248..6144272 (25 bp)
GTGCCAATATCATTGACGCCGTGGT
LOC_Os06g11590
OsAffx.4800.1.S1_at--216--1831Chr06:6144263..6144287 (25 bp)
ACGCCGTGGTCCAATATTATGGCAC
LOC_Os06g11590
OsAffx.4800.1.S1_at--100--5691Chr06:6144292..6144316 (25 bp)
GACATTGATATCATTCCCCTAATCT
LOC_Os06g11590
OsAffx.4800.1.S1_at--986--9751Chr06:6144311..6144335 (25 bp)
TAATCTCCCCATGTACACTAAGTCA
LOC_Os06g11590
Target Sequence 
AAAATCTGCGAACTCCGGTGCTACCCAACCAGTAACCCCACCGCCTCCCATTTCCACGAGTGGTCCAGTCCAAAGGGAAT
ACATATAACTGAGCAAAGGACGGGAGAAGAAGAAGTTGCGTTGCCCCGTACGCCTCGCGTTTCGATCGGCGGCGGCTTGT
GGGCTTGTGGCCGGCCTGGCCTGCTGCTGTTTGCGGCTGCGATTGAGCTTGCGTCCCGATGCGGCCACGCCGGAGTAGCA
CAACGGCTACATTTCGTCGCGGTGCGGCGCCGCATGACGTGGGGGACTAGGATGCCGGGGATAACGGGCTGCTGCCGGTT
GAACACTGCGGATTCACGAGCAAACCAGGTGACTCAATGTCACCGAGAATGTCACGGGGGAATGTCACCGAATCCCAATC
CGGTAATGGACCTTTTTCATGGTGCCAATATCATTGACGCCGTGGTCCAATATTATGGCACCAATGACATTGATATCATT
CCCCTAATCTCCCCATGTACACTAAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis