Browse Element(s) Details

OsAffx.4931.1.S1_at

Description

tigr:9634.m02466
TID=OsAffx.4931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g24890	11/11	hypothetical protein
LOC_Os09g30270	2/11	transposon protein, putative, Mutator sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g24840	NA	NA	6	+	14570161..14574896	phosphoinositide phosphatase family protein, putative
LOC_Os06g24850	Os.52594.1.S1_at	1/11	6	+	14578529..14579060	AUX/IAA family protein
LOC_Os06g24860	OsAffx.21280.1.S1_s_at	11/11	6	+	14580910..14582306	hypothetical protein
LOC_Os06g24860	OsAffx.29868.2.S1_at	1/11	6	+	14580910..14582306	hypothetical protein
LOC_Os06g24870	Os.15478.1.S1_x_at	6/11	6	+	14583495..14589176	Bromodomain containing protein, expressed
LOC_Os06g24870	Os.15478.1.S1_at	2/11	6	+	14583495..14589176	Bromodomain containing protein, expressed
LOC_Os06g24880	NA	NA	6	+	14588809..14589860	hypothetical protein
LOC_Os06g24890	OsAffx.4931.1.S1_at	11/11	6	+	14597471..14598720	hypothetical protein
LOC_Os06g24900	OsAffx.27814.1.S1_at	9/11	6	+	14599887..14600672	hypothetical protein
LOC_Os06g24910	Os.54290.1.S1_at	11/11	6	+	14601719..14604946	expressed protein
LOC_Os06g24910	Os.19102.1.S1_at	3/11	6	+	14601719..14604946	expressed protein
LOC_Os06g24920	OsAffx.16782.1.S1_at	9/11	6	+	14605173..14607146	hypothetical protein
LOC_Os06g24930	NA	NA	6	+	14615411..14616280	transposon protein, putative, Ac/Ds sub-class, expressed
LOC_Os06g24950	OsAffx.22385.1.S1_x_at	3/11	6	+	14620186..14621253	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24960	NA	NA	6	+	14621848..14624451	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4931.1.S1_at--183--115	1	Chr06:14597681..14597705 (25 bp)	AGTCCTCCTTCCTACCGAGCTGATG	LOC_Os06g24890
OsAffx.4931.1.S1_at--824--381	1	Chr06:14597677..14597701 (25 bp)	CTCCTTCCTACCGAGCTGATGGTGG	LOC_Os06g24890
OsAffx.4931.1.S1_at--762--791	1	Chr06:14597550..14597574 (25 bp)	GGTTGAAGGTGATTGTTGTGCCCAT	LOC_Os06g24890
OsAffx.4931.1.S1_at--1131--531	1	Chr06:14597546..14597570 (25 bp)	GAAGGTGATTGTTGTGCCCATATCT	LOC_Os06g24890
OsAffx.4931.1.S1_at--733--775	1	Chr06:14597543..14597567 (25 bp)	GGTGATTGTTGTGCCCATATCTATC	LOC_Os06g24890
OsAffx.4931.1.S1_at--14--661	1	Chr06:14597540..14597564 (25 bp)	GATTGTTGTGCCCATATCTATCTCA	LOC_Os06g24890
OsAffx.4931.1.S1_at--1100--1077	1	Chr06:14597538..14597562 (25 bp)	TTGTTGTGCCCATATCTATCTCACC	LOC_Os06g24890
OsAffx.4931.1.S1_at--742--663	1	Chr06:14597536..14597560 (25 bp)	GTTGTGCCCATATCTATCTCACCTA	LOC_Os06g24890
OsAffx.4931.1.S1_at--43--729	1	Chr06:14597533..14597557 (25 bp)	GTGCCCATATCTATCTCACCTACTT	LOC_Os06g24890
OsAffx.4931.1.S1_at--369--355	2	Chr09:18431920..18431944 (25 bp)	CTTCTCTTACTTATTACCAGGAGGT	LOC_Os09g30270
OsAffx.4931.1.S1_at--973--375	2	Chr09:18431923..18431947 (25 bp)	CTCTTACTTATTACCAGGAGGTGTT	LOC_Os09g30270

Target Sequence

AGTCCTCCTTCCTACCGAGCTGATGGTGGTGCTCTACGTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGT
TGGCAATTGAGGTGAAGGTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTGATTGTTGTGCCCATATCT
ATCTCACCTACTTCCACCTTCTCTTACTTATTACCAGGAGGTGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis