Browse Element(s) Details


OsAffx.4949.1.S1_at

Description tigr:9634.m02688
TID=OsAffx.4949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2816011/11hypothetical protein
LOC_Os06g256701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28124Os.9486.1.S1_at11/116+15967623..15972952HGA1, putative, expressed
LOC_Os06g28140NANA6+15976245..15980223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28150OsAffx.31802.2.S1_at5/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150OsAffx.31802.1.S1_at4/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150Os.50418.1.S1_at3/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28160OsAffx.4949.1.S1_at11/116+15995593..15999301hypothetical protein
LOC_Os06g28170OsAffx.31803.2.S1_at11/116+16001990..16005099hypothetical protein
LOC_Os06g28194Os.17494.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.17494.2.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194OsAffx.15640.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.25253.1.S1_at1/116+16010335..16031862phosphoglucomutase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4949.1.S1_at--394--8732Chr06:15996355..15996433 (25 bp)
TGTAACGGGTCTCCTCAACATTGAG
LOC_Os06g28160
OsAffx.4949.1.S1_at--948--651Chr06:15996290..15996314 (25 bp)
ATGCACTTGCTGAACACCTGTCTGA
LOC_Os06g28160
OsAffx.4949.1.S1_at--1130--2671Chr06:15995993..15996017 (25 bp)
AAGCGTCTCAGCGATGGGTTCCAAT
LOC_Os06g28160
OsAffx.4949.1.S1_at--484--8631Chr06:15995979..15996003 (25 bp)
TGGGTTCCAATCCTTTATGCCTAAA
LOC_Os06g28160
OsAffx.4949.1.S1_at--474--6852Chr06:15995943..15995967 (25 bp)
GTTTGGCAACTACCATCGTGAGTTC
LOC_Os06g28160
OsAffx.4949.1.S1_at--722--9412Chr06:15995928..15995952 (25 bp)
TCGTGAGTTCGTTAAATGCCCCAAG
LOC_Os06g28160
OsAffx.4949.1.S1_at--313--7791Chr06:15995901..15995925 (25 bp)
GGTGCCATGCTCAAATGACTGCGCG
LOC_Os06g28160
OsAffx.4949.1.S1_at--289--5731Chr06:15995885..15995909 (25 bp)
GACTGCGCGGTCTATGTCATTAGGT
LOC_Os06g28160
OsAffx.4949.1.S1_at--1126--9111Chr06:15995719..15995850 (25 bp)
TGCTGATGATTTTCAACCGCCTGAC
LOC_Os06g28160
OsAffx.4949.1.S1_at--562--5691Chr06:15995697..15995721 (25 bp)
GACTCACGTGTTCTTCGGGCACAGA
LOC_Os06g28160
OsAffx.4949.1.S1_at--947--1951Chr06:15995662..15995686 (25 bp)
ACTGATTTTCCATTGCTTCAACCTA
LOC_Os06g28160
Target Sequence 
TGTAACGGGTCTCCTCAACATTGAGAATGTCACTAGAGTTGGCAGTAAGGACAACTTCAGCCCACATGCACTTGCTGAAC
ACCTGTCTGACTGTCTGAAGGGTGTCGACCGTTTAAAGGCCGAGCAGCTTTTGCTGCCAATCATCAACAATGACCACTGT
ACACTCTACATCGTATACCTGAACCAAGGTAGTTTTGATATACTGGACTCCAATGACTATGACCAAATAGGAGGAAAGCA
GAGCCAGCATCACTACCCTTTGGCCCAGAAGGTCCTCAAGCGTCTCAGCGATGGGTTCCAATCCTTTATGCCTAAAGTTT
TTAAAAAGTTTGGCAACTACCATCGTGAGTTCGTTAAATGCCCCAAGATGGTGCCATGCTCAAATGACTGCGCGGTCTAT
GTCATTAGGTACATGGAGCGGTACCAGGGGAACCCTGACAAGCTTGCTGATGATTTTCAACCGCCTGACTCACGTGTTCT
TCGGGCACAGATCCTGCACCAACTGATTTTCCATTGCTTCAACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis