Browse Element(s) Details


OsAffx.4956.1.S1_at

Description tigr:9634.m02747
TID=OsAffx.4956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2872011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28670OsAffx.4954.1.S1_x_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28670OsAffx.4954.1.S1_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28680OsAffx.4955.1.S1_at11/116+16334040..16334907hypothetical protein
LOC_Os06g28690OsAffx.27854.2.S1_at10/116+16338517..16339770hypothetical protein
LOC_Os06g28700NANA6+16341336..16341614hypothetical protein
LOC_Os06g28710OsAffx.26327.1.S1_at11/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710Os.15412.1.S1_x_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710OsAffx.26327.1.S1_s_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28720OsAffx.4956.1.S1_at11/116+16351390..16352259expressed protein
LOC_Os06g28730Os.40388.2.S1_s_at11/116+16352729..16353523hypothetical protein
LOC_Os06g28740Os.21650.1.S1_at9/116+16362087..16365456expressed protein
LOC_Os06g28740Os.55477.1.S1_at3/116+16362087..16365456expressed protein
LOC_Os06g28740Os.52687.1.A1_at1/116+16362087..16365456expressed protein
LOC_Os06g28750OsAffx.32334.1.S1_s_at7/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28750OsAffx.32334.1.S1_x_at4/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4956.1.S1_at--12--6231Chr06:16351471..16351495 (25 bp)
GATGGCCGAGGATCCTTCGGCCCAG
LOC_Os06g28720
OsAffx.4956.1.S1_at--618--10611Chr06:16351486..16351510 (25 bp)
TTCGGCCCAGTGCTAGTCGTGCTCG
LOC_Os06g28720
OsAffx.4956.1.S1_at--990--3791Chr06:16351557..16351581 (25 bp)
CTGCGGCCGGAGACCGTCCAAGTCG
LOC_Os06g28720
OsAffx.4956.1.S1_at--992--7511Chr06:16351613..16351637 (25 bp)
GTGGAACTACCGCTGCTCACGCGGA
LOC_Os06g28720
OsAffx.4956.1.S1_at--1130--2871Chr06:16351645..16351669 (25 bp)
AAGGGCTTCGGCGTGATGCAGAATC
LOC_Os06g28720
OsAffx.4956.1.S1_at--525--4091Chr06:16351734..16351758 (25 bp)
CGACGTGTTCGAGATCAAGTTGTGC
LOC_Os06g28720
OsAffx.4956.1.S1_at--421--1271Chr06:16351745..16351769 (25 bp)
AGATCAAGTTGTGCGCTCCGGTGAA
LOC_Os06g28720
OsAffx.4956.1.S1_at--53--9171Chr06:16351856..16351880 (25 bp)
TGCCGCTCGGCGTGCCACGGCAGTA
LOC_Os06g28720
OsAffx.4956.1.S1_at--840--3931Chr06:16351907..16351931 (25 bp)
CGGCAGGTTTCAGGAGGGCTCCACC
LOC_Os06g28720
OsAffx.4956.1.S1_at--368--4131Chr06:16351947..16351971 (25 bp)
CGCAGTGAGGCTGACGCATCCGCAG
LOC_Os06g28720
OsAffx.4956.1.S1_at--432--5791Chr06:16351959..16351983 (25 bp)
GACGCATCCGCAGGTACTCGGCAGG
LOC_Os06g28720
Target Sequence 
GATGGCCGAGGATCCTTCGGCCCAGTGCTAGTCGTGCTCGCCGTCATCTCCTTCCTCGCCGTCTCCGCGTGCATCGCCGG
GCGGCTCTGCGGCCGGAGACCGTCCAAGTCGTCGTCGTCCAGGGGAGAGCAGATGCGTGGCGGTGGAACTACCGCTGCTC
ACGCGGACGCCGAGAAGGGCTTCGGCGTGATGCAGAATCCGGCGGCGGCGGCGGTCATGAGGCCAGTGCCGAGCTCACGC
GCCACGGTGCACGACGTCGACGACGACGTGTTCGAGATCAAGTTGTGCGCTCCGGTGAAGCCGCCCACGGCCGCGGGACG
GCAGGGAGGATCAGGCGGCGACGGCGGCGGTGGCAGCGCGCCGCAGCCGCGGCCCCCGCCTGCAGTGCCGCTCGGCGTGC
CACGGCAGTACGCGGCAGCGGCAGCTGCGGCGGCGGCGGCAGGTTTCAGGAGGGCTCCACCGCCGAGCGGCGGCGCCGCA
GTGAGGCTGACGCATCCGCAGGTACTCGGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis