Browse Element(s) Details


OsAffx.4981.1.S1_at

Description tigr:9634.m03025
TID=OsAffx.4981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant thionin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3235011/11Plant thionin family protein
LOC_Os06g323703/11Plant thionin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32310OsAffx.26087.1.S1_x_at11/116+18805665..18806481hypothetical protein
LOC_Os06g32310OsAffx.26087.1.S1_at11/116+18805665..18806481hypothetical protein
LOC_Os06g32320OsAffx.15694.1.S1_at10/116+18809317..18811262hypothetical protein
LOC_Os06g32330OsAffx.15695.1.S1_x_at4/116+18816252..18816728hypothetical protein
LOC_Os06g32330OsAffx.4378.1.S1_at2/116+18816252..18816728hypothetical protein
LOC_Os06g32330OsAffx.4378.1.S1_x_at1/116+18816252..18816728hypothetical protein
LOC_Os06g32340NANA6+18821333..18826727transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32350OsAffx.4981.1.S1_at11/116+18827824..18828457Plant thionin family protein
LOC_Os06g32360NANA6+18835529..18835984hypothetical protein
LOC_Os06g32370OsAffx.4981.1.S1_at3/116+18836880..18837326Plant thionin family protein
LOC_Os06g32370Os.23224.1.S1_s_at1/116+18836880..18837326Plant thionin family protein
LOC_Os06g32379NANA6+18838624..18839511NA
LOC_Os06g32390Os.24831.3.S1_x_at7/116+18847648..18851152retrotransposon protein, putative, unclassified
LOC_Os06g32390Os.24831.1.S1_x_at7/116+18847648..18851152retrotransposon protein, putative, unclassified
LOC_Os06g32390Os.24831.4.S1_x_at2/116+18847648..18851152retrotransposon protein, putative, unclassified
LOC_Os06g32390Os.24831.3.S1_s_at1/116+18847648..18851152retrotransposon protein, putative, unclassified
LOC_Os06g32390Os.23706.1.A1_x_at1/116+18847648..18851152retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4981.1.S1_at--205--6372Chr06:18837237..18837261 (25 bp)
GATCCATGTGGAAGCTAAGAGCTGC
LOC_Os06g32370
OsAffx.4981.1.S1_at--707--571Chr06:18828338..18828362 (25 bp)
ATCCACCTCGGTAAGAAACGTCTAT
LOC_Os06g32350
OsAffx.4981.1.S1_at--889--7532Chr06:18837163..18837187 (25 bp)
GTGGCTCAAGGGAAGCCTGTGCTAA
LOC_Os06g32370
OsAffx.4981.1.S1_at--967--7611Chr06:18828285..18828309 (25 bp)
GGGAAGCCTGTGCTAAACTCTCTAC
LOC_Os06g32350
OsAffx.4981.1.S1_at--300--9831Chr06:18828272..18828296 (25 bp)
TAAACTCTCTACCTGCAAACACTTT
LOC_Os06g32350
OsAffx.4981.1.S1_at--299--1752Chr06:18837131..18837155 (25 bp)
ACCTGCAAACACTTTGATGGGAGCT
LOC_Os06g32370
OsAffx.4981.1.S1_at--711--10511Chr06:18827915..18828234 (25 bp)
TTCACTCTGATACGGTTGCTGCCAA
LOC_Os06g32350
OsAffx.4981.1.S1_at--495--3871Chr06:18827909..18828228 (25 bp)
CTGATACGGTTGCTGCCAATGAAGG
LOC_Os06g32350
OsAffx.4981.1.S1_at--417--4392Chr06:18832614..18832638 (25 bp)
CCAATGAAGGAGTGAATGCTGCCGT
NONE
OsAffx.4981.1.S1_at--1067--4031Chr06:18827865..18827889 (25 bp)
CGTTGCGAGGATGCATGCGATCGCT
LOC_Os06g32350
OsAffx.4981.1.S1_at--584--9052Chr06:18832574..18832598 (25 bp)
TGCATGCGATCGCTTCTGCACAAAT
NONE
Target Sequence 
GATCCATGTGGAAGCTAAGAGCTGCTGCCCATCCACCTCGGTAAGAAACGTCTATAACTCATGCCGTTTCGCGGGTGGCT
CAAGGGAAGCCTGTGCTAAACTCTCTACCTGCAAACACTTTGATGGGAGCTGCCAGCCACCTTACGATCACCTCACCCTT
CACTCTGATACGGTTGCTGCCAATGAAGGAGTGAATGCTGCCGTGGAGCGTTGCGAGGATGCATGCGATCGCTTCTGCAC
AAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis