Browse Element(s) Details


OsAffx.5031.2.S1_x_at

Description gb:NM_185515.1
DB_XREF= gi:34898115
GEN=OJ1165_F02.13
TID=OsAffx.5031.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1165_F02.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g308005/11hypothetical protein
LOC_Os10g296404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30750Os.5293.1.S1_at11/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750OsAffx.25182.1.S1_s_at1/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760Os.24630.1.A1_at11/1110+15692353..15695114pentatricopeptide, putative
LOC_Os10g30770Os.46784.1.S1_x_at11/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30770Os.46784.2.S1_x_at7/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30790Os.46160.2.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.1.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.2.S1_x_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.2.S1_x_at3/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.1.S1_x_at1/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30800OsAffx.5031.1.S1_x_at11/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.3.S1_x_at7/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.2.S1_x_at5/1110+15711737..15715861hypothetical protein
LOC_Os10g30809NANA10+15718382..15719258NA
LOC_Os10g30820OsAffx.30617.1.S1_at11/1110+15722780..15723483hypothetical protein
LOC_Os10g30826OsAffx.19542.3.S1_x_at5/1110+15725902..15727677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30832NANA10+15728699..15729751retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30840NANA10+15734459..15734833AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5031.2.S1_x_at--81--8673Chr05:7884571..7884659 (25 bp)
TGTGGGACCCACACCAGCAGCATGT
NONE
OsAffx.5031.2.S1_x_at--892--4531Chr07:29250880..29250904 (25 bp)
GCCCTTCATAGTTGTCTGCACCAAA
NONE
OsAffx.5031.2.S1_x_at--416--1575Chr07:29250919..29250943 (25 bp)
AGCTCTTTGCCCAACACCAAAAATT
NONE
OsAffx.5031.2.S1_x_at--422--4534Chr07:29250954..29250978 (25 bp)
GCCGCCAAGAAATCCAGGTCCAATC
NONE
OsAffx.5031.2.S1_x_at--649--1035Chr07:29250969..29250993 (25 bp)
AGGTCCAATCTCTTATTTGCTTTGA
NONE
OsAffx.5031.2.S1_x_at--8--6533Chr07:29250995..29251019 (25 bp)
GATTTGCAATCACGTGGATGTTCTT
NONE
OsAffx.5031.2.S1_x_at--860--7971Chr07:29251010..29251034 (25 bp)
GGATGTTCTTTGCTAATCGTACGAT
NONE
OsAffx.5031.2.S1_x_at--217--3051Chr07:29251024..29251048 (25 bp)
AATCGTACGATCATTGACTCTGCTG
NONE
OsAffx.5031.2.S1_x_at--685--6431Chr07:29251032..29251056 (25 bp)
GATCATTGACTCTGCTGTTCGAGTT
NONE
OsAffx.5031.2.S1_x_at--711--2751Chr07:29251120..29251144 (25 bp)
AAGAAAGAAGCACCTCCTGAGGCAG
NONE
OsAffx.5031.2.S1_x_at--509--3371Chr07:29251130..29251154 (25 bp)
CACCTCCTGAGGCAGCGACGAAGAG
NONE
Target Sequence 
TGTGGGACCCACACCAGCAGCATGTGGTCGGCAAACAGCAGCAGCAGGTGGCCGGCAGCAGCATCGATCAACCTCCAACG
CCCTTCATAGTTGTCTGCACCAAACACTCGTGCTCCGCAGCTCTTTGCCCAACACCAAAAATTAAATCTCACCGCCGCCA
AGAAATCCAGGTCCAATCTCTTATTTGCTTTGATGATTTGCAATCACGTGGATGTTCTTTGCTAATCGTACGATCATTGA
CTCTGCTGTTCGAGTTGGCCCACGACGACGACAGCCACCACGGCGACGACGACCACGATGATGACGAGGGTGGCGCTGCA
AGAAAGAAGCACCTCCTGAGGCAGCGACGAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5031.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis