Browse Element(s) Details


OsAffx.5089.1.S1_at

Description tigr:9634.m04186
TID=OsAffx.5089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4336011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43330NANA6+26047163..26050103retrotransposon protein, putative, unclassified
LOC_Os06g43340OsAffx.20387.1.S1_x_at1/116+26051062..26056937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43350OsAffx.28078.1.S1_x_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28078.1.S1_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28081.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.26754.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.20024.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43360OsAffx.5089.1.S1_at11/116+26067995..26068468hypothetical protein
LOC_Os06g43370OsAffx.15908.2.S1_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.15908.2.S1_x_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.26754.1.S1_x_at1/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5089.1.S1_at--1132--5211Chr06:26068028..26068052 (25 bp)
GAATTTTTCGAGACTCAGGATGCCA
LOC_Os06g43360
OsAffx.5089.1.S1_at--980--6351Chr06:26068046..26068070 (25 bp)
GATGCCAAGACCTCCCGAGGCAGTA
LOC_Os06g43360
OsAffx.5089.1.S1_at--42--1311Chr06:26068072..26068096 (25 bp)
AGAGGAAAGTCCACGTCCAATTCAC
LOC_Os06g43360
OsAffx.5089.1.S1_at--867--2031Chr06:26068102..26068126 (25 bp)
ACTTCCCTCCTGTGATGGTTTCGTT
LOC_Os06g43360
OsAffx.5089.1.S1_at--1087--10571Chr06:26068147..26068171 (25 bp)
TTCTCTTCTCTGTTTGTCCAAGACT
LOC_Os06g43360
OsAffx.5089.1.S1_at--349--7271Chr06:26068162..26068186 (25 bp)
GTCCAAGACTTCAAGGGATTCCTTA
LOC_Os06g43360
OsAffx.5089.1.S1_at--467--9971Chr06:26068185..26068209 (25 bp)
TAGAAGCTTTCAAGTCCGCCAGTAT
LOC_Os06g43360
OsAffx.5089.1.S1_at--1134--10091Chr06:26068272..26068296 (25 bp)
TATCCGGAAACATAGGTGGCACCCC
LOC_Os06g43360
OsAffx.5089.1.S1_at--851--4271Chr06:26068346..26068370 (25 bp)
CCTGTTTCCGCTACATGGCGTACAT
LOC_Os06g43360
OsAffx.5089.1.S1_at--571--8471Chr06:26068361..26068385 (25 bp)
TGGCGTACATCCATTTGCTTTTGTT
LOC_Os06g43360
OsAffx.5089.1.S1_at--1083--3571Chr06:26068372..26068396 (25 bp)
CATTTGCTTTTGTTTCACCGGTGGC
LOC_Os06g43360
Target Sequence
GAATTTTTCGAGACTCAGGATGCCAAGACCTCCCGAGGCAGTAGAGAGGAAAGTCCACGTCCAATTCACCTTGCACTTCC
CTCCTGTGATGGTTTCGTTTCCCGCCCACAAGAACTATCTTCTCTTCTCTGTTTGTCCAAGACTTCAAGGGATTCCTTAG
AAGCTTTCAAGTCCGCCAGTATGAAAATAGGCTGGATTTCTAAGATAAATTCAAGTTACCAGGAAAAGAAAAAGTCCAAA
ACCGTATCCGGAAACATAGGTGGCACCCCCCTCCCCCAGATGCGGCTTCCCTGTACTTCCTACTTCCGTATTCCCGTCCC
TGTTTCCGCTACATGGCGTACATCCATTTGCTTTTGTTTCACCGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis