Browse Element(s) Details


OsAffx.5117.1.S1_at

Description tigr:9634.m04440
TID=OsAffx.5117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=symbiosis-related disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4569011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45690OsAffx.5117.1.S1_at11/116+27665634..27669509NB-ARC domain containing protein, expressed
LOC_Os06g45700NANA6+27671518..27671769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5117.1.S1_at--746--9811Chr06:27668920..27668944 (25 bp)
TAACATCTCTTGATCTTAGTCCCCT
LOC_Os06g45690
OsAffx.5117.1.S1_at--227--5831Chr06:27669000..27669024 (25 bp)
GACCGACAATATTTCACTGCTCTTA
LOC_Os06g45690
OsAffx.5117.1.S1_at--109--7691Chr06:27669101..27669125 (25 bp)
GGGTCAAGTTACTACCTCACTGGAA
LOC_Os06g45690
OsAffx.5117.1.S1_at--346--5251Chr06:27669123..27669147 (25 bp)
GAATCTCTTACAGTTGACAGCACCT
LOC_Os06g45690
OsAffx.5117.1.S1_at--812--7331Chr06:27669169..27669193 (25 bp)
GTGCAGTGCTCACTTCTCTGAAGAA
LOC_Os06g45690
OsAffx.5117.1.S1_at--213--10551Chr06:27669202..27669226 (25 bp)
TTCATTCGGATTTCAGGGTCACTTC
LOC_Os06g45690
OsAffx.5117.1.S1_at--81--1051Chr06:27669241..27669265 (25 bp)
AGGTGCAGGCACTTCTACTCTTAAC
LOC_Os06g45690
OsAffx.5117.1.S1_at--1010--3651Chr06:27669260..27669284 (25 bp)
CTTAACCTCTCTGCAAGATCTTGGG
LOC_Os06g45690
OsAffx.5117.1.S1_at--129--3031Chr06:27669292..27669316 (25 bp)
AATGCTGCAATCTACATTCTCTTCC
LOC_Os06g45690
OsAffx.5117.1.S1_at--220--4811Chr06:27669350..27669374 (25 bp)
GCTCGAGATTGATTCATGCCCATGT
LOC_Os06g45690
OsAffx.5117.1.S1_at--290--611Chr06:27669365..27669389 (25 bp)
ATGCCCATGTGTTGAGTCATTGCCA
LOC_Os06g45690
Target Sequence 
TAACATCTCTTGATCTTAGTCCCCTAAGATCATTAAAATCTCTGGTAATACACAATTGTGTATCACTAAGAAAACTCTTT
GACCGACAATATTTCACTGCTCTTAGGGATTTGGAAGTGACCAATGCATCAAGTTTTGCTGAAGCATGGAGTGAACTGTT
AGGATCCAGATATGCAGAGTGGGGTCAAGTTACTACCTCACTGGAATCTCTTACAGTTGACAGCACCTTATTCCTCAACT
CCCCTTTGTGTGCAGTGCTCACTTCTCTGAAGAAGCTAACAATTCATTCGGATTTCAGGGTCACTTCCCTCTCAAGACAA
CAGGTGCAGGCACTTCTACTCTTAACCTCTCTGCAAGATCTTGGGTTTATACAATGCTGCAATCTACATTCTCTTCCCAG
TGAACTGCACAAAATATACACTCTCAAGCAGCTCGAGATTGATTCATGCCCATGTGTTGAGTCATTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis