Browse Element(s) Details


OsAffx.5118.1.S1_x_at

Description tigr:9634.m04449
TID=OsAffx.5118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4578011/11hypothetical protein
LOC_Os05g363203/11hypothetical protein
LOC_Os06g474103/11hypothetical protein
LOC_Os06g474201/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5118.1.S1_x_at--446--5273Chr05:21428895..21428914 (20 bp)
GAATGAGGGGATGCTCTCCTCCTCA
LOC_Os05g36320
OsAffx.5118.1.S1_x_at--870--5075Chr08:23737655..23737678 (24 bp)
GCAGCGCACGCATCAGGCGGTCGCG
NONE
OsAffx.5118.1.S1_x_at--223--1852Chr05:21429027..21429051 (25 bp)
ACGCATCAGGCGGTCGCGGCCATCA
LOC_Os05g36320
OsAffx.5118.1.S1_x_at--758--4191Chr06:27704106..27704126 (21 bp)
CCCGAGTGAGATGGAAACGCTGCGA
LOC_Os06g45780
OsAffx.5118.1.S1_x_at--200--4073Chr05:21429634..21429654 (21 bp)
CGAGTGAGATGGAAACGCTGCGACC
NONE
OsAffx.5118.1.S1_x_at--809--6232Chr06:28725295..28725319 (25 bp)
GATGGAAACGCTGCGACCGCCTGAT
LOC_Os06g47410
OsAffx.5118.1.S1_x_at--926--5951Chr06:27704006..27704030 (25 bp)
GAGCAATGGCTGTCTCCCCGTGGAC
LOC_Os06g45780
OsAffx.5118.1.S1_x_at--370--4013Chr05:21429761..21429785 (25 bp)
CGTCGCCGCCAACGAGAAGGTTCGC
NONE
OsAffx.5118.1.S1_x_at--303--9332Chr05:21429763..21429787 (25 bp)
TCGCCGCCAACGAGAAGGTTCGCCG
NONE
OsAffx.5118.1.S1_x_at--1002--9111Chr06:27703922..27703946 (25 bp)
TGCTGACGCGAGATGTGGCCTCCAT
LOC_Os06g45780
OsAffx.5118.1.S1_x_at--1051--4451Chr06:27703905..27703929 (25 bp)
GCCTCCATGGAACAGCCGCAGCCAG
LOC_Os06g45780
Target Sequence 
GAATGAGGGGATGCTCTCCTCCTCATCGGCGTCGACGACGCGGCTGTCCACGGGGAGACAGCCGTTGCTCGCCCCCGGCC
GCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGAGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCACCA
TCCCGAGTGAGATGGAAACGCTGCGACCGCCTGATGCGTGCGCTGCGGCTGTCGCCGTTCCGGGCGCGGGAGGCGGAGGA
GAAGCTGGCGGCAGCAGGGGCGAGCAATGGCTGTCTCCCCGTGGACGGCCGCGTCGTCGCCGCCAACGAGAAGGTTCGCC
GTCGCCGCCGGGTGGTTGTTGGTGTTGCTGACGCGAGATGTGGCCTCCATGGAACAGCCGCAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5118.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis