Browse Element(s) Details

OsAffx.5142.1.S1_x_at

Description

tigr:9634.m04680
TID=OsAffx.5142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47980	11/11	hypothetical protein
LOC_Os06g28860	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47920	OsAffx.28162.1.S1_at	11/11	6	+	28984905..28986851	pentatricopeptide, putative
LOC_Os06g47930	Os.50234.1.S1_at	11/11	6	+	28987079..28989337	expressed protein
LOC_Os06g47940	Os.32506.1.S1_at	11/11	6	+	28992798..28994024	nitrogen fixation protein, putative, expressed
LOC_Os06g47950	OsAffx.15977.1.S1_s_at	11/11	6	+	28994482..28996359	pentatricopeptide, putative, expressed
LOC_Os06g47960	OsAffx.28163.1.S1_at	11/11	6	+	28997830..28998483	RNase H domain-containing protein, putative
LOC_Os06g47970	Os.11917.1.S1_at	11/11	6	+	29001191..29002543	expressed protein
LOC_Os06g47980	OsAffx.5142.1.S1_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47980	OsAffx.5142.1.S1_x_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47990	Os.35344.18.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	Os.35344.3.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	OsAffx.22940.5.S1_x_at	3/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g48000	OsAffx.15978.1.S1_x_at	11/11	6	+	29020795..29022244	Peroxidase 16 precursor, putative
LOC_Os06g48000	OsAffx.15978.1.S1_at	11/11	6	+	29020795..29022244	Peroxidase 16 precursor, putative
LOC_Os06g48010	OsAffx.15978.1.S1_x_at	11/11	6	+	29026225..29027407	Peroxidase 16 precursor, putative
LOC_Os06g48010	OsAffx.15978.1.S1_at	11/11	6	+	29026225..29027407	Peroxidase 16 precursor, putative
LOC_Os06g48010	Os.23271.2.A1_x_at	1/11	6	+	29026225..29027407	Peroxidase 16 precursor, putative
LOC_Os06g48020	Os.53541.1.S1_at	11/11	6	+	29034688..29037184	Peroxidase 45 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5142.1.S1_x_at--482--1057	2	Chr10:14678583..14678607 (25 bp)	TTCTCTGCAAGCTCGCGGGGGCAAG	NONE
OsAffx.5142.1.S1_x_at--844--463	1	Chr06:29010335..29010359 (25 bp)	GCGTTGCCTGCGGACGACGACATCG	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--844--665	1	Chr06:29010179..29010203 (25 bp)	GTTGACAGCCTTAGCAAGTTTGCCG	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--719--1073	1	Chr06:29010178..29010202 (25 bp)	TTGACAGCCTTAGCAAGTTTGCCGA	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--225--565	1	Chr06:29010176..29010200 (25 bp)	GACAGCCTTAGCAAGTTTGCCGACG	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--466--215	1	Chr06:29010175..29010199 (25 bp)	ACAGCCTTAGCAAGTTTGCCGACGA	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--434--169	1	Chr06:29010173..29010197 (25 bp)	AGCCTTAGCAAGTTTGCCGACGAAA	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--1012--441	1	Chr06:29010172..29010196 (25 bp)	GCCTTAGCAAGTTTGCCGACGAAAC	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--76--947	1	Chr06:29010168..29010192 (25 bp)	TAGCAAGTTTGCCGACGAAACCCGG	LOC_Os06g47980
OsAffx.5142.1.S1_x_at--191--179	3	Chr10:14678964..14678986 (23 bp)	ACCGAGGTCCATAACCTGTCGGAGT	NONE
OsAffx.5142.1.S1_x_at--728--725	1	Chr06:29010098..29010122 (25 bp)	GTCCATAACCTGTCGGAGTGGGTAA	LOC_Os06g47980

Target Sequence

TTCTCTGCAAGCTCGCGGGGGCAAGGCGGGAGGGCGGCGCCGCAACGGCCGCCGGCGGAGGCGGCGTGCGAGCGCGGCGG
CTTCTCCGCTTTCTTCACCTCCTCGTCCCGCTCGGGCGACGTGGGCTGAGCATCTGCGGCAGCAATGCGGTCGCGGCGCC
GGCGTTGCCTGCGGACGACGACATCGACTCCGCCGCCCCGCGCGAGGAGGAGGAGGAGGAGACGGGCACCGCGCGCGCCG
CCGGCGCGTCGTCATCGGGCGGGTCGGGGAGCAGGAGCGGGAGCTACCCGCCGTTCAAGCGGGGGAGGGACGAGCTTGTT
GACAGCCTTAGCAAGTTTGCCGACGAAACCCGGCCGTCGAAGCGGCCGGCGGCGAAGCACCGGACTCGCGCCACCGAGGT
CCATAACCTGTCGGAGTGGGTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis