Browse Element(s) Details

OsAffx.5148.1.S1_x_at

Description

tigr:9634.m04750
TID=OsAffx.5148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48790	11/11	hypothetical protein
LOC_Os01g34860	4/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48750	Os.39027.1.S1_s_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.139.1.S1_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.39027.1.S1_at	4/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48790	OsAffx.5148.1.S1_x_at	11/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48790	OsAffx.19937.1.S1_at	1/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48800	Os.57530.1.S1_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.57530.1.S1_x_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.19896.2.S1_x_at	8/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48810	Os.2617.2.S1_a_at	11/11	6	+	29537942..29540221	high-affinity sodium transporter, putative, expressed
LOC_Os06g48820	NA	NA	6	+	29546213..29546692	retrotransposon protein, putative, LINE subclass
LOC_Os06g48830	OsAffx.28177.1.S1_at	10/11	6	+	29553260..29554030	hypothetical protein
LOC_Os06g48839	NA	NA	6	+	29557416..29558207	NA

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5148.1.S1_x_at--474--209	1	Chr06:29531132..29531156 (25 bp)	ACATGCATTCCTGAGATTTTTGAGC	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--406--867	2	Chr06:29532154..29532178 (25 bp)	TGTGGGCAGCCAGATGAACTTCTTG	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--504--211	1	Chr06:29532199..29532223 (25 bp)	ACATGTAAACTTTTTGGCAAGCCCA	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--381--691	1	Chr06:29532281..29532305 (25 bp)	GTATCCTTTTGCTGTACTGTCTCAA	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--1052--497	1	Chr06:29532467..29532491 (25 bp)	GCATCCTGCGCATCCAATTGAAAAT	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--339--1023	2	Chr06:29532492..29532516 (25 bp)	TATTGTGGTGGCGACATGGACTTCA	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--604--569	1	Chr06:29532510..29532534 (25 bp)	GACTTCACAGAAATGGCGCATGGCA	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--603--1019	2	Chr06:29532612..29532636 (25 bp)	TATATCTATTTCGATCCTACCCGAG	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--1141--995	2	Chr06:29532629..29532653 (25 bp)	TACCCGAGATGCTAAGTTCGCCCAA	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--227--283	1	Chr06:29532642..29532666 (25 bp)	AAGTTCGCCCAATGCATGAACCGAA	LOC_Os06g48790
OsAffx.5148.1.S1_x_at--2--545	1	Chr06:29532659..29532683 (25 bp)	GAACCGAACTGCTTCAAGGGCGAAT	LOC_Os06g48790

Target Sequence

ACATGCATTCCTGAGATTTTTGAGCATGATGCCATGATATATCTGCTAAAGAATAATCTGAAAGTTTGCAAAGCAGTTGA
AATGGCAGGAGTAAAGATTGAAGCTGCACTAAGGAAAAAGGGATATCTATATGATCTTCAAGTAATCTGTGTTGCAAATG
AGCGTGTGGGCAGCCAGATGAACTTCTTGGACTTCAAGTGTCCATATTCACATGTAAACTTTTTGGCAAGCCCAAAAGTT
GGAAGTGGACTTAAGTTATTCTTTGCTGAATTCAGTAATGATGATGATGATGTATCCTTTTGCTGTACTGTCTCAAGAAA
ATCAAAACATGGGACCAGGATTATGCATCCTGCGCATCCAATTGAAAATTATTGTGGTGGCGACATGGACTTCACAGAAA
TGGCGCATGGCACGCATGAGCTGACCAATGCAAGAATCATTAGTGGTGGGAAGTGGGCAGGCAATAGAGTAGGCATGTGT
GGGGACGATTATATCTATTTCGATCCTACCCGAGATGCTAAGTTCGCCCAATGCATGAACCGAACTGCTTCAAGGGCGAA
T

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis