Browse Element(s) Details


OsAffx.5282.1.S1_at

Description tigr:9635.m01010
TID=OsAffx.5282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1043011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5282.1.S1_at--567--3977Chr01:31051577..31051596 (20 bp)
CGGTCTGACCGAATATGGCTTTGGC
NONE
OsAffx.5282.1.S1_at--251--1791Chr07:5607249..5607273 (25 bp)
ACCGAATATGGCTTTGGCGGCTCGG
LOC_Os07g10430
OsAffx.5282.1.S1_at--1152--8472Chr09:3424533..3424554 (22 bp)
TGGCGGCTCGGGATCGGCACACCCA
NONE
OsAffx.5282.1.S1_at--88--6411Chr07:5607224..5607248 (25 bp)
GATCGGCACACCCAGAGCATGCCAT
LOC_Os07g10430
OsAffx.5282.1.S1_at--920--1356Chr12:5729956..5729980 (25 bp)
AGAGCATGCCATCCCGGCCATATGG
NONE
OsAffx.5282.1.S1_at--134--7831Chr07:5607180..5607204 (25 bp)
GGTCAGACTGGCATGTACCCGCCGG
LOC_Os07g10430
OsAffx.5282.1.S1_at--898--5731Chr07:5607175..5607199 (25 bp)
GACTGGCATGTACCCGCCGGTCAGA
LOC_Os07g10430
OsAffx.5282.1.S1_at--490--8431Chr07:5607139..5607163 (25 bp)
TGGCCAGTCAGACCGCTACTCTCTG
LOC_Os07g10430
OsAffx.5282.1.S1_at--808--1371Chr07:5607130..5607154 (25 bp)
AGACCGCTACTCTCTGGCCGGTCAG
LOC_Os07g10430
OsAffx.5282.1.S1_at--388--4411Chr07:5607101..5607125 (25 bp)
GCCAGGGCCGTTGGTCAGACCGTCA
LOC_Os07g10430
OsAffx.5282.1.S1_at--676--4231Chr07:5607094..5607118 (25 bp)
CCGTTGGTCAGACCGTCACTATGTG
LOC_Os07g10430
Target Sequence 
CGGTCTGACCGAATATGGCTTTGGCGGCTCGGGATCGGCACACCCAGAGCATGCCATCCCGGCCATATGGCTGGCCGGTC
AGACTGGCATGTACCCGCCGGTCAGACCGCCACTGCCTGGCCAGTCAGACCGCTACTCTCTGGCCGGTCAGACCGGCCAG
GGCCGTTGGTCAGACCGTCACTATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis