Browse Element(s) Details


OsAffx.5283.1.S1_at

Description tigr:9635.m01011
TID=OsAffx.5283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g104405/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5283.1.S1_at--1001--4131Chr07:5610588..5610612 (25 bp)
CGCGCATTCGGAGCGCAGGAACCGT
LOC_Os07g10440
OsAffx.5283.1.S1_at--396--2891Chr07:5610815..5610839 (25 bp)
AAGGATGTTCAGTCCTGCCAGGATG
LOC_Os07g10440
OsAffx.5283.1.S1_at--132--6291Chr07:5610842..5610866 (25 bp)
GATGTTCATGTCCTGTGGTCGATCC
LOC_Os07g10440
OsAffx.5283.1.S1_at--320--8671Chr07:5610855..5610879 (25 bp)
TGTGGTCGATCCTCATCGACTCGCA
LOC_Os07g10440
OsAffx.5283.1.S1_at--447--7131Chr07:5610882..5610906 (25 bp)
GTCATCCGGCTCTCATGAAGCTGAA
LOC_Os07g10440
OsAffx.5283.1.S1_at--556--4811Chr07:5610907..5610931 (25 bp)
GCTCTGAAGTTTGAGGCCATGGCAT
NONE
OsAffx.5283.1.S1_at--260--3491Chr07:5610924..5610948 (25 bp)
CATGGCATGAGCAGCAAAACTTCAG
NONE
OsAffx.5283.1.S1_at--1053--2391Chr07:5610939..5610963 (25 bp)
AAAACTTCAGAACTACTTTGTGTAG
NONE
OsAffx.5283.1.S1_at--219--2871Chr07:5610974..5610998 (25 bp)
AAGGGTTTTCCTGAGAAGTCATTCT
NONE
OsAffx.5283.1.S1_at--458--5331Chr07:5610988..5611012 (25 bp)
GAAGTCATTCTAGGGTGTGGTTTTT
NONE
OsAffx.5283.1.S1_at--177--3711Chr07:5610997..5611021 (25 bp)
CTAGGGTGTGGTTTTTGGCTTTGAT
NONE
Target Sequence 
CGCGCATTCGGAGCGCAGGAACCGTAGGGGAATGTATATCTTGTACAAGGATGTTCAGTCCTGCCAGGATGAGGATGTTC
ATGTCCTGTGGTCGATCCTCATCGACTCGCACCGTCATCCGGCTCTCATGAAGCTGAAGCTCTGAAGTTTGAGGCCATGG
CATGAGCAGCAAAACTTCAGAACTACTTTGTGTAGAGACTAAGGGAAGGGTTTTCCTGAGAAGTCATTCTAGGGTGTGGT
TTTTGGCTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis