Browse Element(s) Details


OsAffx.5386.1.S1_at

Description tigr:9635.m02025
TID=OsAffx.5386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2054411/11aspartate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20510Os.50323.1.S1_at11/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.13580.1.A1_at9/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.49579.1.S1_at1/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20520OsAffx.5385.1.S1_at10/117+11856020..11857097hypothetical protein
LOC_Os07g20530OsAffx.28530.1.S1_at10/117+11858096..11859486hypothetical protein
LOC_Os07g20530Os.31535.1.A1_at1/117+11858096..11859486hypothetical protein
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20560NANA7+11876946..11881654retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20570OsAffx.5387.1.S1_at9/117+11883225..11884009hypothetical protein
LOC_Os07g20580Os.54215.1.S1_x_at10/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20580OsAffx.31822.1.S1_at1/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004072molecular_functionaspartate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5386.1.S1_at--765--8191Chr07:11871591..11871882 (25 bp)
GGAATTGCATTTTGGTGGAATACAG
LOC_Os07g20544
OsAffx.5386.1.S1_at--294--5131Chr07:11870712..11870736 (25 bp)
GCAAATTATCTGAGCAATCTAGGAT
LOC_Os07g20544
OsAffx.5386.1.S1_at--825--5191Chr07:11870699..11870723 (25 bp)
GCAATCTAGGATCTGCCAGTTCTAT
LOC_Os07g20544
OsAffx.5386.1.S1_at--1062--3811Chr07:11870687..11870711 (25 bp)
CTGCCAGTTCTATTTATCCTCTAAT
LOC_Os07g20544
OsAffx.5386.1.S1_at--1064--9751Chr07:11870666..11870690 (25 bp)
TAATGTTATACTTAGGCCCCGTTCG
LOC_Os07g20544
OsAffx.5386.1.S1_at--878--4511Chr07:11870651..11870675 (25 bp)
GCCCCGTTCGATGCTTCCAAAAGGA
LOC_Os07g20544
OsAffx.5386.1.S1_at--1124--2431Chr07:11870280..11870657 (25 bp)
AAAAGGAGCCAATGCCTCGACTTAT
LOC_Os07g20544
OsAffx.5386.1.S1_at--445--3031Chr07:11870270..11870294 (25 bp)
AATGCCTCGACTTATGATTGATGGA
LOC_Os07g20544
OsAffx.5386.1.S1_at--1110--8011Chr07:11870245..11870269 (25 bp)
GGAGTCATAGTTGCCTTGTATACCT
LOC_Os07g20544
OsAffx.5386.1.S1_at--386--291Chr07:11870239..11870263 (25 bp)
ATAGTTGCCTTGTATACCTTGAAGC
LOC_Os07g20544
OsAffx.5386.1.S1_at--891--5191Chr07:11870213..11870237 (25 bp)
GCAATTGAAGCTCCTGCTGTCTACA
LOC_Os07g20544
Target Sequence 
GGAATTGCATTTTGGTGGAATACAGGATGTTAAGTTCAAATTGGCAAATTATCTGAGCAATCTAGGATCTGCCAGTTCTA
TTTATCCTCTAATGTTATACTTAGGCCCCGTTCGATGCTTCCAAAAGGAGCCAATGCCTCGACTTATGATTGATGGAGGA
GTCATAGTTGCCTTGTATACCTTGAAGCAGCAATTGAAGCTCCTGCTGTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis