Browse Element(s) Details


OsAffx.5415.1.S1_at

Description tigr:9635.m02248
TID=OsAffx.5415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2360011/11Root cap family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23560OsAffx.28555.1.S1_at11/117+13320480..13321350hypothetical protein
LOC_Os07g23570Os.9017.1.S1_x_at11/117+13322237..13324546Cytochrome P450 family protein, expressed
LOC_Os07g23580NANA7+13328336..13329246hypothetical protein
LOC_Os07g23590NANA7+13335527..13335820hypothetical protein
LOC_Os07g23600OsAffx.5415.1.S1_at11/117+13340955..13341623Root cap family protein
LOC_Os07g23610NANA7+13345750..13347138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23620Os.46306.1.S1_x_at6/117+13347999..13348847transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_x_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23640Os.10497.1.S1_s_at11/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_s_at8/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_x_at3/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23649NANA7+13357371..13357521NA
LOC_Os07g23660Os.10497.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_x_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.51813.1.S1_at1/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5415.1.S1_at--684--8271Chr07:13340994..13341018 (25 bp)
GGCTTCAAGTTTTACGACCTCACTG
LOC_Os07g23600
OsAffx.5415.1.S1_at--299--10471Chr07:13341005..13341029 (25 bp)
TTACGACCTCACTGATAAGGTGCAT
LOC_Os07g23600
OsAffx.5415.1.S1_at--211--1411Chr07:13341043..13341067 (25 bp)
AGACTCACCGCTTCGACTATGTCAA
LOC_Os07g23600
OsAffx.5415.1.S1_at--949--751Chr07:13341061..13341085 (25 bp)
ATGTCAACAACCTCAGTGTCAGCGC
LOC_Os07g23600
OsAffx.5415.1.S1_at--952--2051Chr07:13341088..13341112 (25 bp)
ACTTGCCAGTTATGGGCGGGACTCT
LOC_Os07g23600
OsAffx.5415.1.S1_at--642--10431Chr07:13341097..13341121 (25 bp)
TTATGGGCGGGACTCTCTGGTACAC
LOC_Os07g23600
OsAffx.5415.1.S1_at--647--8591Chr07:13341114..13341138 (25 bp)
TGGTACACCATCTCTGACATCTTCT
LOC_Os07g23600
OsAffx.5415.1.S1_at--886--8951Chr07:13341128..13341152 (25 bp)
TGACATCTTCTCCACTAACTGTGCC
LOC_Os07g23600
OsAffx.5415.1.S1_at--1010--9791Chr07:13341143..13341167 (25 bp)
TAACTGTGCCATCGACAGGTTCGGT
LOC_Os07g23600
OsAffx.5415.1.S1_at--212--1832Chr07:13341172..13341192 (21 bp)
ACGCCGGCATCTCTATGCAAGAGCA
LOC_Os07g23600
OsAffx.5415.1.S1_at--53--8431Chr07:13341551..13341575 (25 bp)
GGCCTCCAAGGTGGACACCAAAGGT
LOC_Os07g23600
Target Sequence 
GGCTTCAAGTTTTACGACCTCACTGATAAGGTGCATAGGGTCCTCGGCCAGACTCACCGCTTCGACTATGTCAACAACCT
CAGTGTCAGCGCCAACTTGCCAGTTATGGGCGGGACTCTCTGGTACACCATCTCTGACATCTTCTCCACTAACTGTGCCA
TCGACAGGTTCGGTCGCCACGCCGGCATCTCTATGCAAGAGCACACAAAATACATGGATCGGAACTTCCTGGTCGCTGTG
CTGCTGGTGCTCTACACCTTGGATCAACAAGAGAATTGGTGCCGACGCCTGGGCGCCGGTAGCATGCCAGCCAACGAAGA
TGGCATGGAGATGACCAATGAACAAACAATTGAAAAGGTTGCTGATTGCCATGGAGTAGAGGACTTGACGGCCTCCAAGG
TGGACACCAAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis