Browse Element(s) Details


OsAffx.5416.1.S1_x_at

Description tigr:9635.m02255
TID=OsAffx.5416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2367010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23610NANA7+13345750..13347138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23620Os.46306.1.S1_x_at6/117+13347999..13348847transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_x_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23640Os.10497.1.S1_s_at11/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_s_at8/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_x_at3/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23649NANA7+13357371..13357521NA
LOC_Os07g23660Os.10497.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_x_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.51813.1.S1_at1/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23670OsAffx.5416.1.S1_at11/117+13368122..13368470hypothetical protein
LOC_Os07g23670OsAffx.5416.1.S1_x_at10/117+13368122..13368470hypothetical protein
LOC_Os07g23680NANA7+13370115..13370972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23690OsAffx.16383.1.S1_at11/117+13371611..13372025late embryogenesis abundant protein, putative
LOC_Os07g23700Os.54774.1.S1_x_at3/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23700Os.54774.1.S1_at2/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23710Os.9017.1.S1_x_at3/117+13381137..13382436Cytochrome P450 family protein
LOC_Os07g23720Os.51151.1.S1_at11/117+13382752..13384349K+ channel tetramerisation domain containing protein, expressed
LOC_Os07g23730Os.52889.1.S1_at11/117+13387132..13390394Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5416.1.S1_x_at--1120--4571Chr07:13368458..13368482 (25 bp)
GCGCTCTACACCATGGATCAACAAG
NONE
OsAffx.5416.1.S1_x_at--877--4252Chr08:14142019..14142115 (25 bp)
CCGGTAGCAGGCCAGCCAGCAAAGA
NONE
OsAffx.5416.1.S1_x_at--147--5011Chr07:13368403..13368427 (25 bp)
GCAGGCCAGCCAGCAAAGACGGCAT
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--290--8431Chr07:13368400..13368424 (25 bp)
GGCCAGCCAGCAAAGACGGCATGGA
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--471--3411Chr07:13368393..13368417 (25 bp)
CAGCAAAGACGGCATGGAGATGACC
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--4--5371Chr07:13368206..13368230 (25 bp)
GAAGAGGTCTGTGAGAGCAGCCATA
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--1074--5931Chr07:13368192..13368216 (25 bp)
GAGCAGCCATATGTGTAGATCGCCA
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--784--1671Chr07:13368188..13368212 (25 bp)
AGCCATATGTGTAGATCGCCACCTG
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--428--4171Chr07:13368172..13368196 (25 bp)
CGCCACCTGCGGGAGGTTTTGCCGA
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--1009--4351Chr07:13368170..13368194 (25 bp)
CCACCTGCGGGAGGTTTTGCCGAGC
LOC_Os07g23670
OsAffx.5416.1.S1_x_at--871--10391Chr07:13368156..13368180 (25 bp)
TTTTGCCGAGCGAGACCAGGGATGT
LOC_Os07g23670
Target Sequence 
GCGCTCTACACCATGGATCAACAAGAGAATTGGCACCGACGCCAAGGCGCCGGTAGCAGGCCAGCCAGCAAAGACGGCAT
GGAGATGACCAATGGACAAACAATTGAAAAGGTTGCTGATGGCCGTGGAGTAGAGGACTTGACGGCCTCCAAGGCGGACA
CCAAAGAGGAGGAGAAGGGGGAAAAGAAGAGGTCTGTGAGAGCAGCCATATGTGTAGATCGCCACCTGCGGGAGGTTTTG
CCGAGCGAGACCAGGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5416.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis