Browse Element(s) Details


OsAffx.5581.1.S1_at

Description tigr:9635.m03979
TID=OsAffx.5581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3986011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39830Os.54958.1.S1_at10/117+23882929..23885479expressed protein
LOC_Os07g39840Os.23129.1.A1_s_at11/117+23886596..23889860expressed protein
LOC_Os07g39840Os.57189.1.S1_at1/117+23886596..23889860expressed protein
LOC_Os07g39850Os.7763.1.S1_x_at11/117+23892410..23897947expressed protein
LOC_Os07g39860OsAffx.5581.1.S1_at11/117+23901467..23901850expressed protein
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5581.1.S1_at--1142--2451Chr07:23901786..23901810 (25 bp)
AACACAAGCAGCCGCGACCGCGAGA
LOC_Os07g39860
OsAffx.5581.1.S1_at--606--7571Chr07:23901706..23901730 (25 bp)
GGGCTGATCCCGTTCGTGATCGACG
LOC_Os07g39860
OsAffx.5581.1.S1_at--83--8831Chr07:23901702..23901726 (25 bp)
TGATCCCGTTCGTGATCGACGCGAT
LOC_Os07g39860
OsAffx.5581.1.S1_at--804--511Chr07:23901688..23901712 (25 bp)
ATCGACGCGATCAGGAGGAGCAACG
LOC_Os07g39860
OsAffx.5581.1.S1_at--980--391Chr07:23901679..23901703 (25 bp)
ATCAGGAGGAGCAACGATCAGCGCG
LOC_Os07g39860
OsAffx.5581.1.S1_at--505--5951Chr07:23901671..23901695 (25 bp)
GAGCAACGATCAGCGCGGCGGCTAC
LOC_Os07g39860
OsAffx.5581.1.S1_at--851--8711Chr07:23901639..23901663 (25 bp)
TGTCGTCGCAGGACGGGAGCTCCCA
LOC_Os07g39860
OsAffx.5581.1.S1_at--319--991Chr07:23901595..23901619 (25 bp)
AGGAGGCACCTGATCGACTACTGGG
LOC_Os07g39860
OsAffx.5581.1.S1_at--595--8251Chr07:23901591..23901615 (25 bp)
GGCACCTGATCGACTACTGGGAGCT
LOC_Os07g39860
OsAffx.5581.1.S1_at--457--3851Chr07:23901586..23901610 (25 bp)
CTGATCGACTACTGGGAGCTCGCCG
LOC_Os07g39860
OsAffx.5581.1.S1_at--384--9291Chr07:23901532..23901556 (25 bp)
TCCGTCCAGGAGACCGGTGCTGCCG
LOC_Os07g39860
Target Sequence 
AACACAAGCAGCCGCGACCGCGAGACGAAGGGGGAGAGAAGATTACTAAAGAGGAGAGGGGTTTTGTGGCAAAAATGGAG
GGGCTGATCCCGTTCGTGATCGACGCGATCAGGAGGAGCAACGATCAGCGCGGCGGCTACCGCGGCGTGTCGTCGCAGGA
CGGGAGCTCCCACGGCGGCGGCGGCGGCAGCAGGAGGCACCTGATCGACTACTGGGAGCTCGCCGGATCGGCGGCGGAGG
ACGCACGGCCGGGCTCCGTCCAGGAGACCGGTGCTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis