Browse Element(s) Details


OsAffx.5616.1.S1_at

Description tigr:9635.m04307
TID=OsAffx.5616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4297011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed
LOC_Os07g42950Os.8316.1.S1_at11/117+25721185..2572370740S ribosomal protein S6, putative, expressed
LOC_Os07g42960Os.22631.1.S1_a_at11/117+25724742..25728339Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os07g42970OsAffx.5616.1.S1_at11/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42970Os.51127.2.S1_x_at1/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5616.1.S1_at--170--10571Chr07:25741901..25741925 (25 bp)
TTCTTCTCGGAGCAGGTGACCAACT
LOC_Os07g42970
OsAffx.5616.1.S1_at--971--4371Chr07:25741920..25741944 (25 bp)
CCAACTGCCGGTACGCGTGCGAGGA
LOC_Os07g42970
OsAffx.5616.1.S1_at--1063--8171Chr07:25742091..25742115 (25 bp)
GGAACCTCGAGAGCCTCTTCGCGGA
LOC_Os07g42970
OsAffx.5616.1.S1_at--737--2591Chr07:25742331..25742351 (21 bp)
AACCGATCGGGTTGTGCCAGTTTAT
LOC_Os07g42970
OsAffx.5616.1.S1_at--514--2591Chr07:25742570..25742591 (22 bp)
AACGAGGACAAATCTATCCTGGAGA
LOC_Os07g42970
OsAffx.5616.1.S1_at--620--1411Chr07:25742593..25742617 (25 bp)
AGACAAAGTCACTACAGTCGCCTCG
LOC_Os07g42970
OsAffx.5616.1.S1_at--405--1891Chr07:25742630..25742654 (25 bp)
ACGTTGCCTACCACCGAAAGCACAG
LOC_Os07g42970
OsAffx.5616.1.S1_at--594--1491Chr07:25742648..25742672 (25 bp)
AGCACAGAGCCGTTAAATCTTGGAA
LOC_Os07g42970
OsAffx.5616.1.S1_at--939--8151Chr07:25742669..25742693 (25 bp)
GGAAAATTCCGTACAGGCGCTTCGC
LOC_Os07g42970
OsAffx.5616.1.S1_at--466--4731Chr07:25742692..25743134 (25 bp)
GCTGTCGACGGATATTCACATCGCA
LOC_Os07g42970
OsAffx.5616.1.S1_at--846--4071Chr07:25743131..25743155 (25 bp)
CGCAAAATGGGACATTTGCCGTTTC
LOC_Os07g42970
Target Sequence 
TTCTTCTCGGAGCAGGTGACCAACTGCCGGTACGCGTGCGAGGAGTGGGGGGTCGGGGTGGAGATGGCGCGGGACGCCGG
GCGGCGCGAGGTGGAGGCCGCGGTGAGGGAGGTGATGGGGGGAGGGGAGAAGGCGGCGGCGATGAGGAGGAAGGCGGCGG
CGGCGGTGGCGCCCGGCGGGTCGTCGCGGCGGAACCTCGAGAGCCTCTTCGCGGAGATCGCGGGCGGCGTCCAACCGATC
GGGTTGTGCCAGTTTATCCGGGGAAACTGTGATATTGTAGGGGTTAAAAATGGTAACGAGGACAAATCTATCCTGGAGAT
AGACAAAGTCACTACAGTCGCCTCGCTGTCGACGGGTACGTTGCCTACCACCGAAAGCACAGAGCCGTTAAATCTTGGAA
AATTCCGTACAGGCGCTTCGCTGTCGACGGATATTCACATCGCAAAATGGGACATTTGCCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis