Browse Element(s) Details


OsAffx.5723.1.S1_x_at

Description gb:NM_189104.1
DB_XREF= gi:34905291
TID=OsAffx.5723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0577B11.17 (P0577B11.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0650011/11pentatricopeptide, putative, expressed
LOC_Os01g582304/11hypothetical protein
LOC_Os09g321203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5723.1.S1_x_at--932--1491Chr08:3674754..3674778 (25 bp)
AGCACAGTGCGTACTGCATCACCGA
LOC_Os08g06500
OsAffx.5723.1.S1_x_at--502--391Chr08:3674771..3674795 (25 bp)
ATCACCGACCGGTTGATGGCGCGGA
LOC_Os08g06500
OsAffx.5723.1.S1_x_at--959--692Chr09:19178831..19178852 (22 bp)
ATGAGGTTGGCCTTGCAGCTGTCCA
LOC_Os09g32120
OsAffx.5723.1.S1_x_at--1086--10711Chr08:3674857..3674881 (25 bp)
TTGCAGCTGTCCATCAGGAGGCACA
LOC_Os08g06500
OsAffx.5723.1.S1_x_at--1018--8691Chr08:3674864..3674888 (25 bp)
TGTCCATCAGGAGGCACACGTCGTG
LOC_Os08g06500
OsAffx.5723.1.S1_x_at--888--2173Chr09:19178865..19178889 (25 bp)
ACACGTCGTGGTGCATGCTGCTGTA
LOC_Os09g32120
OsAffx.5723.1.S1_x_at--197--7773Chr09:19178874..19178898 (25 bp)
GGTGCATGCTGCTGTACAGCGACAC
LOC_Os09g32120
OsAffx.5723.1.S1_x_at--364--7032Chr08:3674901..3674925 (25 bp)
GTACAGCGACACCACCACGTACGGG
LOC_Os08g06500
OsAffx.5723.1.S1_x_at--1043--3812Chr08:3674955..3674979 (25 bp)
CTGCTCGAAGCAGCGGAACGCGTTC
LOC_Os08g06500
OsAffx.5723.1.S1_x_at--466--5451Chr08:3674970..3674994 (25 bp)
GAACGCGTTCACGATGTGGTCGGAC
LOC_Os08g06500
OsAffx.5723.1.S1_x_at--805--9432Chr09:19178985..19179009 (25 bp)
TCGGGTTGCCGCTGCAGGCTCAGCT
NONE
Target Sequence 
AGCACAGTGCGTACTGCATCACCGACCGGTTGATGGCGCGGATGGCGTTGTTGGCCGTGCTCCGGGCGCCGTCCTGTGGA
AGGGGAGCGGGATGAGGTTGGCCTTGCAGCTGTCCATCAGGAGGCACACGTCGTGGTGCATGCTGCTGTACAGCGACACC
ACCACGTACGGGCTCACCGTCACCGCGCCCAGCGGCGCCTGCTGCTCGAAGCAGCGGAACGCGTTCACGATGTGGTCGGA
CGGCGTCGGGTTGCCGCTGCAGGCTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5723.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis